Detail information of GWHGAAZE033301


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002300069.10pectate lyase family protein [Populus trichocarpa]
COGYP_001628843.12E-14hypothetical protein Bpet0241
Swissprottr|P24396|PLY18_SOLLC4E-155Probable pectate lyase P18 (Precursor)
trEMBLtr|B9GIX5|B9GIX5_POPTR0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT5G63180.13E-117Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene44468394448668-
GWHAAZE00000094mRNA44468394448668-
GWHAAZE00000094exon44468394447063-
GWHAAZE00000094exon44476334448102-
GWHAAZE00000094exon44482354448452-
GWHAAZE00000094exon44485564448668-
GWHAAZE00000094CDS44485564448668-
GWHAAZE00000094CDS44482354448452-
GWHAAZE00000094CDS44476334448102-
GWHAAZE00000094CDS44468394447063-
Transcript Sequence

Network for GWHGAAZE033301

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41362746.10E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.639
SRR3591707mature leaf4.005
SRR3591708Shoot apex2.412
SRR3591709Stem9.045
SRR3591710White floral bud0.118
SRR3591711White flower0.349
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.105
SRP173429 SRR8316895Juvenile bud stage 0.053
SRR8316896Juvenile bud stage 0.568
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.064
SRR8316900Third green stage 0.189
SRR8316901Third green stage 0.163
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.618
SRR8316903Complete white stage 0.114
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.179
SRR8316905Silver flowering stage0.015
SRR8316906Gold flowering stage 0.342
SRR8316907Gold flowering stage 0.122
SRR8316908Gold flowering stage 1.353
SRP132670SRR6706286Control1.277
SRR6706287Light intensity 50%0.450
SRR6706288Light intensity 20%0.599
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.325
CNS0095593Slightly white alabastrum(diploid) 20.575
CNS0095594Slightly white alabastrum(diploid) 30.429
CNS0095595Whole white alabastrum(diploid) 20.174
CNS0095596Whole white alabastrum(diploid) 30.250
CNS0095597Whole white alabastrum(diploid) 40.156
CNS0095598Silvery flower (diploied) 10.161
CNS0095599Silvery flower (diploied) 20.321
CNS0095600Silvery flower (diploied) 30.070
CNS0095601Golden flower (diploid) 11.258
CNS0095602Golden flower (diploid) 20.922
CNS0095603Golden flower (diploid) 30.486
CNS0095604Slightly white alabastrum(tetraploid) 10.172
CNS0095605Slightly white alabastrum(tetraploid) 20.308
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.736
CNS0095608Whole white alabastrum(tetraploid) 20.007
CNS0095609Whole white alabastrum(tetraploid) 30.085
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.275
CNS0095612Silvery flower (tetraploid) 30.232
CNS0095613Golden flower (tetraploid) 10.120
CNS0095614Golden flower (tetraploid) 20.404
CNS0095615Golden flower (tetraploid) 30.059
CRA001975CRR073297Stem 11.650
CRR073298Stem 21.311
CRR073299Stem 33.974
CRR073300Leaf 10.200
CRR073301Leaf 20.522
CRR073302Leaf 30.312
CRR073303Juvenile bud 10.562
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.163
CRR073306Third green 11.203
CRR073307Third green 20.000
CRR073308Third green 30.393
CRR073309Second white 10.338
CRR073310Second white 20.612
CRR073311Second white 30.067
CRR073312Silver flowering 10.277
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.197
CRR073315Gold flowering 11.017
CRR073316Gold flowering 20.436
CRR073317Gold flowering 37.639
CRR073318Tawny withering 1107.192
CRR073319Tawny withering 254.202
CRR073320Tawny withering 312.132