Gene detail

Detail information of GWHGAAZE033310

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271033.3	5.1874E-118	PREDICTED: myb-related protein 315 [Vitis vinifera]
Swissprot	tr\|P81394\|MYB15_ANTMA	1E-91	Myb-related protein 315
trEMBL	tr\|F6GX58\|F6GX58_VITVI	4E-120	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44544.1}
TAIR10	AT5G14340.1	6E-67	myb domain protein 40

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4586917	4587950	+
GWHAAZE00000094	mRNA	4586917	4587950	+
GWHAAZE00000094	exon	4586917	4587049	+
GWHAAZE00000094	exon	4587160	4587289	+
GWHAAZE00000094	exon	4587392	4587950	+
GWHAAZE00000094	CDS	4586917	4587049	+
GWHAAZE00000094	CDS	4587160	4587289	+
GWHAAZE00000094	CDS	4587392	4587950	+

Transcript Sequence
>GWHTAAZE033349 ATGGGAAGACAACCCTGTTGTGATAAAGTTGGGTTGAAGAGAGGTCCATGGACCATTGAAGAAGATCATAAGCTTATGAGCTTTATCCTCAACAATGGCATTCAATGCTGGCGAATGATTCCTAAACTTGCAGGTTTGCTAAGATGCGGAAAGAGTTGCAGATTAAGATGGATTAATTATCTGAGGCCGGATCTTAAAAGAGGGACTCTTTCCGAAATGGAAGAGAATCAAATTATACAACTTCATGCCCGTCTCGGTAACAGGTGGTCTAAAATTGCGTCGCACTTTCCTGGTCGCACAGATAATGAAATCAAGAACCACTGGAACACTCGAATTAAGAAAAGGCTCAAGCTTCTTGGAATAGACCCTCTGACCCACAAACCCATCGAGCAAAAAGAGGAAACTGAAACAATTCCAGAGTCGAATTCAGAGGGAAATTTTGAAGGCGCATTAGCCAGTGGCCTAGAATTAGATAATCAAAGAAAGAATGAAGCTGACGTAACAATAAAAGATGACACAACCAGTGTTTTAAACAACTATGAAATGTTGTGTGAAAGCTTGGACATGAACTTATGGATGAGCAAAGAATCCAACACTTGCAGTAGTACTAATTCTTACAGTTACAGCCCATCATTTTCCCTGGAAAATTCGGCGAATCCATCATCAATGGGTGAATCCTCTGCTTCTGTACAAGAAGACTCCTTGCAGCAATGGGTTGATAAGGTTGATTCAATACTCTCATGGGATGGTTTCAATCAACTAGAAGAAGATCTTTTCTTTTTTGGTAAATATCCAATGAATCTATCCCCATCTGTTCCTTAA

Network for GWHGAAZE033310

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	5.80E-11
PF00249.32	Myb_DNA-binding	68	110	5.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.188
	SRR3591706	second leaf	0.302
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.940
	SRR3591709	Stem	5.201
	SRR3591710	White floral bud	1.847
	SRR3591711	White flower	1.227
	SRR3591712	Green floral bud	2.518
	SRR3591713	Yellow flower	1.437
SRP173429	SRR8316895	Juvenile bud stage	0.858
	SRR8316896	Juvenile bud stage	0.823
	SRR8316897	Juvenile bud stage	0.191
	SRR8316894	Third green stage	0.165
	SRR8316900	Third green stage	1.273
	SRR8316901	Third green stage	0.706
	SRR8316898	Complete white stage	0.701
	SRR8316899	Complete white stage	4.799
	SRR8316903	Complete white stage	0.909
	SRR8316902	Silver flowering stage	1.574
	SRR8316904	Silver flowering stage	2.301
	SRR8316905	Silver flowering stage	0.374
	SRR8316906	Gold flowering stage	3.918
	SRR8316907	Gold flowering stage	3.746
	SRR8316908	Gold flowering stage	6.999
SRP132670	SRR6706286	Control	0.923
	SRR6706287	Light intensity 50%	1.178
	SRR6706288	Light intensity 20%	2.178
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.516
	CNS0095593	Slightly white alabastrum(diploid) 2	0.712
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.491
	CNS0095596	Whole white alabastrum(diploid) 3	0.244
	CNS0095597	Whole white alabastrum(diploid) 4	0.464
	CNS0095598	Silvery flower (diploied) 1	0.718
	CNS0095599	Silvery flower (diploied) 2	0.345
	CNS0095600	Silvery flower (diploied) 3	0.327
	CNS0095601	Golden flower (diploid) 1	0.565
	CNS0095602	Golden flower (diploid) 2	0.150
	CNS0095603	Golden flower (diploid) 3	0.505
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.561
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.941
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.899
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.302
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.092
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.054
	CNS0095610	Silvery flower (tetraploid) 1	1.961
	CNS0095611	Silvery flower (tetraploid) 2	0.069
	CNS0095612	Silvery flower (tetraploid) 3	1.218
	CNS0095613	Golden flower (tetraploid) 1	0.898
	CNS0095614	Golden flower (tetraploid) 2	2.915
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.622
	CRR073298	Stem 2	0.057
	CRR073299	Stem 3	0.294
	CRR073300	Leaf 1	0.054
	CRR073301	Leaf 2	0.281
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.071
	CRR073304	Juvenile bud 2	0.991
	CRR073305	Juvenile bud 3	0.526
	CRR073306	Third green 1	1.287
	CRR073307	Third green 2	2.519
	CRR073308	Third green 3	0.521
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.215
	CRR073311	Second white 3	0.275
	CRR073312	Silver flowering 1	0.742
	CRR073313	Silver flowering 2	0.385
	CRR073314	Silver flowering 3	0.060
	CRR073315	Gold flowering 1	0.449
	CRR073316	Gold flowering 2	0.254
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.185
	CRR073319	Tawny withering 2	1.447
	CRR073320	Tawny withering 3	0.150