Gene detail

Detail information of GWHGAAZE033317

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009763215.1	2.6567E-133	PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Nicotiana sylvestris]
Swissprot	tr\|Q9FKA7\|ORTH1_ARATH	0.0000007	E3 ubiquitin-protein ligase ORTHRUS 1
trEMBL	tr\|K4BDH2\|K4BDH2_SOLLC	4E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g093760.2.1}
TAIR10	AT3G27330.1	2E-56	zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4631018	4632871	+
GWHAAZE00000094	mRNA	4631018	4632871	+
GWHAAZE00000094	exon	4631018	4631265	+
GWHAAZE00000094	exon	4631567	4631649	+
GWHAAZE00000094	exon	4631755	4631906	+
GWHAAZE00000094	exon	4631999	4632048	+
GWHAAZE00000094	exon	4632145	4632219	+
GWHAAZE00000094	exon	4632379	4632871	+
GWHAAZE00000094	CDS	4631018	4631265	+
GWHAAZE00000094	CDS	4631567	4631649	+
GWHAAZE00000094	CDS	4631755	4631906	+
GWHAAZE00000094	CDS	4631999	4632048	+
GWHAAZE00000094	CDS	4632145	4632219	+
GWHAAZE00000094	CDS	4632379	4632871	+

Transcript Sequence
>GWHTAAZE033356 ATGGTGAGTGAAGAAGAACCAAAACAGAGCCCTTCAAACCCCAAGAAATTGCAGGAGAAACAACAAAATGTGGAGAATAGTGTATTATTCAGTCCTGGTTTCAGATCGGTGGCAGCAATGGCGGGTTGGGATGAAGAGGCTCTTCTTGTAGCCAGTCTTGTCGTTGAAGACACCCCACCAGATCGCCTCTCCAAACACAAGAAACGCTCTGTTTTGCCCTTAAAGTCTCCCCCAACAAGTTCAAGACGAAAACGCAGGGCTCAGAGAAGAAGTCCTGTTTCAATACCTGTGGCTGTTCTTAATCTTGATGAAGATGAGAGTGCTAATGAAGAGAGTGAGAATAAGAAGAAAGAATCGAAAACAAAGCAGAATTCTGATAAGAAAGTGGCTAATGATGAATCCAATGGAGAGGGATCTGGAGTTTCTTGCTCACGTTCGGCTATTCTGTGCATGGATAAACTTCGTGATGAGCTTTCTTGTGCGATTTGTCTGGAGATTTGCTTTGAACCCAGTACCACTCCTTGTGGACACAGCTTTTGTAAGAAATGTTTGCGATCTGCTGCTGACAAATGCGGCAAGCGATGCCCAAAGTGCAGACAGCTTATCAGCAATGGAAGATCTTGCACAATCAACACTGTTCTTTGGAATACTATACAACTATTATTTCCGCAAGAAGTTGAAGCAAGGAAGGCAGCTACATCCTCAAACAGCCGAGAAGCCAATCGTCCCAGCCCTGCAAGAGGGATTAGTCACAATAACGCACGAAATCGGCGTGTTCTAGCCCTTGATAGTCCAGAATTGGAACATAGCAACCTCGAAAGAAGGAGAAGCAGTCACCATCTAAGAAACCGAAGTGTTCGGCCTTCTTCTGGAGTACCAAGCAGAAGAGATGATGTTGTTACTGTGAGGAGGAGCAGAGAGGTGCCGGACCAAGATGAGGATGCTGCATTGGCTTTGAGATTGCAGAGAGAAGAGTTTATGGAGGCTTTTAGGGGACCCCAAGAACCACCATCCAGAAGCTCTCTCATGGTGGCCAGAGCAAACTTGAGGGCGATGGCATCTAGAGCTGTTGATATTCGCATGAGACGTCAGGATATGTAG

Network for GWHGAAZE033317

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00097.26	zf-C3HC4	160	198	7.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.325
	SRR3591706	second leaf	2.776
	SRR3591707	mature leaf	0.280
	SRR3591708	Shoot apex	24.321
	SRR3591709	Stem	3.169
	SRR3591710	White floral bud	1.026
	SRR3591711	White flower	1.518
	SRR3591712	Green floral bud	1.419
	SRR3591713	Yellow flower	1.362
SRP173429	SRR8316895	Juvenile bud stage	3.427
	SRR8316896	Juvenile bud stage	3.698
	SRR8316897	Juvenile bud stage	1.381
	SRR8316894	Third green stage	1.392
	SRR8316900	Third green stage	0.962
	SRR8316901	Third green stage	0.706
	SRR8316898	Complete white stage	0.052
	SRR8316899	Complete white stage	0.721
	SRR8316903	Complete white stage	0.112
	SRR8316902	Silver flowering stage	0.133
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.062
	SRR8316906	Gold flowering stage	0.161
	SRR8316907	Gold flowering stage	0.378
	SRR8316908	Gold flowering stage	0.143
SRP132670	SRR6706286	Control	1.119
	SRR6706287	Light intensity 50%	1.364
	SRR6706288	Light intensity 20%	1.454
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.566
	CNS0095593	Slightly white alabastrum(diploid) 2	2.713
	CNS0095594	Slightly white alabastrum(diploid) 3	2.310
	CNS0095595	Whole white alabastrum(diploid) 2	2.211
	CNS0095596	Whole white alabastrum(diploid) 3	0.914
	CNS0095597	Whole white alabastrum(diploid) 4	1.612
	CNS0095598	Silvery flower (diploied) 1	1.610
	CNS0095599	Silvery flower (diploied) 2	1.333
	CNS0095600	Silvery flower (diploied) 3	0.562
	CNS0095601	Golden flower (diploid) 1	0.676
	CNS0095602	Golden flower (diploid) 2	0.865
	CNS0095603	Golden flower (diploid) 3	0.788
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.590
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.036
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.842
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.258
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.690
	CNS0095610	Silvery flower (tetraploid) 1	0.217
	CNS0095611	Silvery flower (tetraploid) 2	0.262
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.119
	CNS0095614	Golden flower (tetraploid) 2	0.082
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	7.299
	CRR073298	Stem 2	6.763
	CRR073299	Stem 3	6.374
	CRR073300	Leaf 1	1.647
	CRR073301	Leaf 2	1.342
	CRR073302	Leaf 3	1.381
	CRR073303	Juvenile bud 1	1.024
	CRR073304	Juvenile bud 2	0.228
	CRR073305	Juvenile bud 3	1.045
	CRR073306	Third green 1	0.008
	CRR073307	Third green 2	0.220
	CRR073308	Third green 3	0.388
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.103
	CRR073315	Gold flowering 1	0.061
	CRR073316	Gold flowering 2	0.695
	CRR073317	Gold flowering 3	0.400
	CRR073318	Tawny withering 1	8.073
	CRR073319	Tawny withering 2	6.286
	CRR073320	Tawny withering 3	9.836