Gene detail

Detail information of GWHGAAZE033335

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097308.1	0	PREDICTED: uncharacterized protein LOC105176266 isoform X1 [Sesamum indicum]
trEMBL	tr\|A0A068U915\|A0A068U915_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_15 {ECO:0000313\|EMBL:CDP04996.1}
TAIR10	AT4G14605.1	2E-133	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	5016063	5018216	-
GWHAAZE00000094	mRNA	5016063	5018216	-
GWHAAZE00000094	exon	5016063	5017219	-
GWHAAZE00000094	exon	5017315	5017540	-
GWHAAZE00000094	exon	5017685	5017734	-
GWHAAZE00000094	exon	5018189	5018216	-
GWHAAZE00000094	CDS	5018189	5018216	-
GWHAAZE00000094	CDS	5017685	5017734	-
GWHAAZE00000094	CDS	5017315	5017540	-
GWHAAZE00000094	CDS	5016063	5017219	-

Transcript Sequence
>GWHTAAZE033374 ATGTTCCAATCTAAGGTTAAGGGGGTAGGACTCACCTTTCTTTTCCTCGGAAGCTATTTTCCTCCCAAGATAAGTATGTATACTAACAGAGACACTGGGATAGATGGGCCATTAAGCTCAAGAGTGGTGCCTGCAAAGCTGTTAGCAGCAGAGAAAGAAGAAGCCAAGGCTGTCTTAACCTTATTCTTGAAGAAACAAGGCTTGAGCAAGGCAGTGGCAACAAGAACCACTAACAAGTCTCGCCTTTTCATTGATCACCTTATCTCAAGGCTCCACTATGTTCATAAATCTCTGTATCTAGTAGGACAGGAGCTTACAACCCCCGAGATCAGAGATGTTCTTAATCGCTACCTTGAAACCCTTCTCGAGGAGCATGGAGAAATTCTGGTTGATCTAGTGGAAAACTTTCCAAGTTCACCTCTAAAAGAAAGCTCAGAGGAAAACTTCGAAAAAGCAACTGCTGAAGAAAGATTGACTGCAACCATTTCTACCCCTAGTACTACCATAGACTCCAAAAAGCTAAAAGACTTGTCGAGAGTGAGTGATATTGGCCCAGCGAGGGAACTTTCTCCACACATTCTCTACCTTATGGATCTTGGCATGGAACTTGGGGTTATTAAGGAAGTGATTCACAAGTTCCCTTCTTTCTCCTATTACAGCTTGGATGGGAATATCAAACCAGTGGTTGAATTCCTACTCGATGATCTCGGCGTACCAAAATCTGATATTCCTACCATCCTCAGCAAAAGGCCTCAACTCTGTGGATTTAGTCTCTCTAAAAATGTAATACCTACCATAACATTTTTAGAAAAATTGGGGATGGACAAGACACAGTGCACAAAAGTGATTTACCGCTTCCCGGCACTTCTAACTTATAGTCGACAGAAGTTGACAGCAACTGTGGATTTTCTCTATGAAATGGGCTTGTCAAATGAAAATGTGGGTAAGATTCTAACACGTTTCCCAAACATTGTATGTTACTCCGTGGAGGATAAGCTGCATCCCACAGCTGAATACTTCCATTCTTTGGGGGTTGATGTTGCCTTTCTTCTCGTTCGATGTCCACATATTTTTTGTCTAAGTATTGAGGCCAATTTGAAGCCCGTGACAGAGTTTTTCTTGGAAAGGGGATACAGCTTAGGGGATGTTGGGACAATGATTTCGAGATATGCGGCTCTGTATTCTCTTAGCTTGGCAGAGGACTTGATACCCAAGTGGGAATTCTTTTTGACAATGCATTATCCAAAATCAGAGTTGATTAAGTTTCCTCAATATTTTGGTTACAGTTTGGAGGAGAGAATCAAACCTAGGTATGCAATTATGAAGGGGAGTGGAGTAAGATTGGTATTGAAAATGCTGCTAGTGCTTTCAGATCAAAAGTTTAATAAGCTTTTTTTATCAGAAATTGAAGAAAATGATTGCCAACTGACCACCCTGCAAGCATGCATGTTGTGCATATAG

Network for GWHGAAZE033335

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	189	375	7.70E-32
PF02536.15	mTERF	351	461	1.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.945
	SRR3591706	second leaf	39.706
	SRR3591707	mature leaf	98.327
	SRR3591708	Shoot apex	16.070
	SRR3591709	Stem	3.898
	SRR3591710	White floral bud	0.057
	SRR3591711	White flower	0.850
	SRR3591712	Green floral bud	0.603
	SRR3591713	Yellow flower	0.912
SRP173429	SRR8316895	Juvenile bud stage	1.382
	SRR8316896	Juvenile bud stage	1.421
	SRR8316897	Juvenile bud stage	1.067
	SRR8316894	Third green stage	0.792
	SRR8316900	Third green stage	1.466
	SRR8316901	Third green stage	1.308
	SRR8316898	Complete white stage	0.109
	SRR8316899	Complete white stage	0.448
	SRR8316903	Complete white stage	0.335
	SRR8316902	Silver flowering stage	0.053
	SRR8316904	Silver flowering stage	0.225
	SRR8316905	Silver flowering stage	0.059
	SRR8316906	Gold flowering stage	0.441
	SRR8316907	Gold flowering stage	0.818
	SRR8316908	Gold flowering stage	0.472
SRP132670	SRR6706286	Control	0.278
	SRR6706287	Light intensity 50%	0.136
	SRR6706288	Light intensity 20%	0.155
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.696
	CNS0095593	Slightly white alabastrum(diploid) 2	0.054
	CNS0095594	Slightly white alabastrum(diploid) 3	1.104
	CNS0095595	Whole white alabastrum(diploid) 2	0.373
	CNS0095596	Whole white alabastrum(diploid) 3	0.639
	CNS0095597	Whole white alabastrum(diploid) 4	0.618
	CNS0095598	Silvery flower (diploied) 1	1.914
	CNS0095599	Silvery flower (diploied) 2	1.037
	CNS0095600	Silvery flower (diploied) 3	0.972
	CNS0095601	Golden flower (diploid) 1	1.575
	CNS0095602	Golden flower (diploid) 2	2.211
	CNS0095603	Golden flower (diploid) 3	1.594
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.333
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.688
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.065
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.386
	CNS0095610	Silvery flower (tetraploid) 1	0.873
	CNS0095611	Silvery flower (tetraploid) 2	1.023
	CNS0095612	Silvery flower (tetraploid) 3	0.516
	CNS0095613	Golden flower (tetraploid) 1	1.088
	CNS0095614	Golden flower (tetraploid) 2	1.327
	CNS0095615	Golden flower (tetraploid) 3	1.421
CRA001975	CRR073297	Stem 1	3.670
	CRR073298	Stem 2	2.287
	CRR073299	Stem 3	3.382
	CRR073300	Leaf 1	0.261
	CRR073301	Leaf 2	0.242
	CRR073302	Leaf 3	0.064
	CRR073303	Juvenile bud 1	0.050
	CRR073304	Juvenile bud 2	0.050
	CRR073305	Juvenile bud 3	0.415
	CRR073306	Third green 1	0.030
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.516
	CRR073310	Second white 2	0.408
	CRR073311	Second white 3	0.192
	CRR073312	Silver flowering 1	0.396
	CRR073313	Silver flowering 2	0.770
	CRR073314	Silver flowering 3	0.151
	CRR073315	Gold flowering 1	46.575
	CRR073316	Gold flowering 2	74.709
	CRR073317	Gold flowering 3	52.775
	CRR073318	Tawny withering 1	1.313
	CRR073319	Tawny withering 2	3.239
	CRR073320	Tawny withering 3	1.579