Gene detail

Detail information of GWHGAAZE033339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002263321.1	0	PREDICTED: protoporphyrinogen oxidase, mitochondrial [Vitis vinifera]
COG	YP_003290940.1	6E-88	protoporphyrinogen oxidase
Swissprot	tr\|O24164\|PPOM_TOBAC	0	Protoporphyrinogen oxidase, mitochondrial
trEMBL	tr\|D7UBE4\|D7UBE4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI40059.3}
TAIR10	AT5G14220.1	9E-180	Flavin containing amine oxidoreductase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	5065867	5073728	+
GWHAAZE00000094	mRNA	5065867	5073728	+
GWHAAZE00000094	exon	5065867	5065920	+
GWHAAZE00000094	exon	5066020	5066059	+
GWHAAZE00000094	exon	5066907	5067042	+
GWHAAZE00000094	exon	5067138	5067203	+
GWHAAZE00000094	exon	5067371	5067421	+
GWHAAZE00000094	exon	5069149	5069219	+
GWHAAZE00000094	exon	5069571	5069607	+
GWHAAZE00000094	exon	5069776	5069841	+
GWHAAZE00000094	exon	5069955	5069995	+
GWHAAZE00000094	exon	5070476	5070608	+
GWHAAZE00000094	exon	5071373	5071552	+
GWHAAZE00000094	exon	5071820	5071894	+
GWHAAZE00000094	exon	5072091	5072214	+
GWHAAZE00000094	exon	5072303	5072450	+
GWHAAZE00000094	exon	5072547	5072621	+
GWHAAZE00000094	exon	5072751	5072857	+
GWHAAZE00000094	exon	5073260	5073398	+
GWHAAZE00000094	exon	5073595	5073728	+
GWHAAZE00000094	five_prime_UTR	5065867	5065889	+
GWHAAZE00000094	CDS	5065890	5065920	+
GWHAAZE00000094	CDS	5066020	5066059	+
GWHAAZE00000094	CDS	5066907	5067042	+
GWHAAZE00000094	CDS	5067138	5067203	+
GWHAAZE00000094	CDS	5067371	5067421	+
GWHAAZE00000094	CDS	5069149	5069219	+
GWHAAZE00000094	CDS	5069571	5069607	+
GWHAAZE00000094	CDS	5069776	5069841	+
GWHAAZE00000094	CDS	5069955	5069995	+
GWHAAZE00000094	CDS	5070476	5070608	+
GWHAAZE00000094	CDS	5071373	5071552	+
GWHAAZE00000094	CDS	5071820	5071894	+
GWHAAZE00000094	CDS	5072091	5072214	+
GWHAAZE00000094	CDS	5072303	5072450	+
GWHAAZE00000094	CDS	5072547	5072621	+
GWHAAZE00000094	CDS	5072751	5072857	+
GWHAAZE00000094	CDS	5073260	5073378	+
GWHAAZE00000094	three_prime_UTR	5073379	5073398	+
GWHAAZE00000094	three_prime_UTR	5073595	5073728	+

Transcript Sequence
>GWHTAAZE033378 TCTGGTGGACCGAGAAACCGGAAATGGATTCAGCTTCCAATGAAGATAAGCCAAGTTCTGCTAAAAGAGTTGCCGTAGTTGGTGCTGGTGTTAGCGGGCTTGCTGCGGCATACAAGTTGAAACAACATGGTTTCAACGTTGCAATATTTGAAGCCGAAGGGAGAGCTGGAGGGAAGTTGAGAAGCACTTTTCAAGATGGTCTCCTATGGGATGAGGGGGCAAATACTATGACTGAGACTGAGGGGGAGGTCAGCTATTTGCTTGATAATCTCAGGCTTCGAGAAAAGCAACAATTTCCAATTTCACAGAACAAGCGGTATATTGCAAGAAATGGAAAACCAGTACTGCTTCAGATACTTCTTGAACCATTCTTGTGGAAGAAAAGTAACTTTTCTAATGCTTCTGATACACAAGAAAGTGTTGATGGGTTCTTTCAACGTCATTTCGGGACAGAGGTTGTCGATTATCTCATTGACCCTTTTGTTGCGGGTGTTAGTGCTGGAGATCCTGATTCACTTTCTATGCGCCATGCATTCCCAGAGTTATGGAACCTAGAGAAAAGGTTTGGTTCAATCATATTTGGGGCAATTCGATCTAAAGTATCTGCCAAGAATAGGAAAGGTGGAGATTTAAAAGGTTCTTCAGCAAATAAGAAGCACCAGCGTGGTTCTTTTTCATTTTTTGGTGGAATGCAGACTCTCACCAATGCATTATCCGCAGAACTTGGAAAAGATGAACTTAACCTCCAGTCAAAGGTGCTGGAGTTATCTTGTAGCTGCAATGAGAATTCTCCAATGGAGAATTGGTCACTTTCTTATGCGTTAACTTCGGACAGCCAATTAAAGGAGCAGTCCTTTGATGCAGTAATCATGACGGCTCCGATATCTGATATTAAAGAAATGAGGATTACCAAGAGAGGAAATCCATTTCTGCTCGATTTTCTCCCTGAGGTGAGTTATATGCCACTATCAGTTATAATCACTACATTCAAGAAGGAGAATATCAAGCAACCTCTTGAGGGATTCGGAGTTCTTATTCCTTCCAAAGAGCAGCAAAATGGTTTGAAGACATTGGGTACTCTCTTCTCTTCAATGATGTTTCCTGGTCGTGCACCCGAAAACCTATATCTTTATACCACCTTTGTTGGAGGCAGTCGAAACAAAGAACTAGCAAAAGCTTTCAAGTACACACTCACTGCATTTGCTCTTTTCAACCCTGTCGAGGACGAGTTACAGCAGGTAGTAACTTCTGATCTTAGACAGCTGCTGGGTGCGGAGGGAGAGCCGACATTTGTTAACCACTTCTATTGGAGTAAAGCATTTCCTCTATATGGGCGTAACTATGATTCAGTTATAGAAGGCATCGAGAAGATGGAGCAATACCTTCCGGGATTTTTCTATGCTGGTAACCATAGAGGAGGACTATCTGTTGGCAAGGCAATATCCTCTGGGTGCAAAGCAGCTGATCTTGTAATATCATATCTGGACTCATCTTCAGATGACAAACTGCCAAGTGAAAACTGAAGTTGAAAAATCGTCTAAAGGTGCTGGGATTCTTCTTCTAAGGACTACAGAGTGCTGCTTTGGGGAAGAAATTATCCTTCTTTCAGAATGCCGAGAGATTTTTGGATTCTTTAACATCATAGGTTGGACATTTAAGGAATAACAAAACATTTTA

Network for GWHGAAZE033339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	23	484	1.60E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00231	PPOX, hemY	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0006779	biological_process	porphyrin-containing compound biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0004729	molecular_function	oxygen-dependent protoporphyrinogen oxidase activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.494
	SRR3591706	second leaf	29.606
	SRR3591707	mature leaf	19.558
	SRR3591708	Shoot apex	25.507
	SRR3591709	Stem	17.248
	SRR3591710	White floral bud	14.091
	SRR3591711	White flower	17.401
	SRR3591712	Green floral bud	10.202
	SRR3591713	Yellow flower	8.672
SRP173429	SRR8316895	Juvenile bud stage	16.811
	SRR8316896	Juvenile bud stage	21.279
	SRR8316897	Juvenile bud stage	10.654
	SRR8316894	Third green stage	7.315
	SRR8316900	Third green stage	17.524
	SRR8316901	Third green stage	16.802
	SRR8316898	Complete white stage	7.341
	SRR8316899	Complete white stage	14.821
	SRR8316903	Complete white stage	11.423
	SRR8316902	Silver flowering stage	5.048
	SRR8316904	Silver flowering stage	8.367
	SRR8316905	Silver flowering stage	3.173
	SRR8316906	Gold flowering stage	13.402
	SRR8316907	Gold flowering stage	14.438
	SRR8316908	Gold flowering stage	20.217
SRP132670	SRR6706286	Control	9.659
	SRR6706287	Light intensity 50%	9.972
	SRR6706288	Light intensity 20%	11.555
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.839
	CNS0095593	Slightly white alabastrum(diploid) 2	13.039
	CNS0095594	Slightly white alabastrum(diploid) 3	12.664
	CNS0095595	Whole white alabastrum(diploid) 2	11.978
	CNS0095596	Whole white alabastrum(diploid) 3	9.626
	CNS0095597	Whole white alabastrum(diploid) 4	7.222
	CNS0095598	Silvery flower (diploied) 1	21.080
	CNS0095599	Silvery flower (diploied) 2	15.875
	CNS0095600	Silvery flower (diploied) 3	10.378
	CNS0095601	Golden flower (diploid) 1	15.980
	CNS0095602	Golden flower (diploid) 2	11.102
	CNS0095603	Golden flower (diploid) 3	10.439
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.310
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.881
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.118
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.865
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.629
	CNS0095610	Silvery flower (tetraploid) 1	12.012
	CNS0095611	Silvery flower (tetraploid) 2	11.317
	CNS0095612	Silvery flower (tetraploid) 3	9.892
	CNS0095613	Golden flower (tetraploid) 1	4.959
	CNS0095614	Golden flower (tetraploid) 2	9.849
	CNS0095615	Golden flower (tetraploid) 3	4.210
CRA001975	CRR073297	Stem 1	12.417
	CRR073298	Stem 2	10.358
	CRR073299	Stem 3	8.385
	CRR073300	Leaf 1	8.206
	CRR073301	Leaf 2	7.615
	CRR073302	Leaf 3	5.818
	CRR073303	Juvenile bud 1	5.064
	CRR073304	Juvenile bud 2	3.438
	CRR073305	Juvenile bud 3	3.910
	CRR073306	Third green 1	0.977
	CRR073307	Third green 2	1.173
	CRR073308	Third green 3	1.171
	CRR073309	Second white 1	1.156
	CRR073310	Second white 2	1.628
	CRR073311	Second white 3	1.392
	CRR073312	Silver flowering 1	0.711
	CRR073313	Silver flowering 2	1.088
	CRR073314	Silver flowering 3	0.997
	CRR073315	Gold flowering 1	5.113
	CRR073316	Gold flowering 2	13.365
	CRR073317	Gold flowering 3	4.740
	CRR073318	Tawny withering 1	8.578
	CRR073319	Tawny withering 2	7.198
	CRR073320	Tawny withering 3	5.506