Gene detail

Detail information of GWHGAAZE033340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660787.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Vitis vinifera]
COG	YP_004775215.1	2E-25	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|A5BBB0\|A5BBB0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN69961.1}
TAIR10	AT5G14210.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	5083389	5087499	+
GWHAAZE00000094	mRNA	5083389	5087499	+
GWHAAZE00000094	exon	5083389	5084742	+
GWHAAZE00000094	exon	5084835	5084968	+
GWHAAZE00000094	exon	5085085	5085328	+
GWHAAZE00000094	exon	5086232	5086443	+
GWHAAZE00000094	exon	5086549	5086574	+
GWHAAZE00000094	exon	5087026	5087137	+
GWHAAZE00000094	exon	5087263	5087499	+
GWHAAZE00000094	CDS	5083389	5084742	+
GWHAAZE00000094	CDS	5084835	5084968	+
GWHAAZE00000094	CDS	5085085	5085328	+
GWHAAZE00000094	CDS	5086232	5086443	+
GWHAAZE00000094	CDS	5086549	5086574	+
GWHAAZE00000094	CDS	5087026	5087137	+
GWHAAZE00000094	CDS	5087263	5087499	+

Transcript Sequence
>GWHTAAZE033379 ATGGGGTATTCAGAGTTGTTCATCATAGTATCTCTTTCGTGGGTTTTCTTTATCACAAGTACCCATCAATTGCAATCCTATGAAACTCAAGTTCTTCTCCAGCTGAGAAGGCATTTGGAATATCCAATGCCCTTGCAAATTTTGGAAAATTACAATGGCGATTTGTGTAACTTGTCTTCAACTCTACATATAAGCATAACGTGCGACGGCAATTCTGTCTCTGAGCTCAAAATCAAGGGAGATAAGCTTGTCAATGTCAGTGAATTCCATGGATTTGCCGTTCCCACTCAAACATTATCTGACAGTTTCTCTATTGATTCCTTTGTCACTACATTGACAAGGTTAACTAACTTGAGGGTTCTTAGTTTAGTGTCCTTGGGGATTTGGGGTCCACTTCCTGACAAAATTCACAGGCTGTTTTCACTTGAGCTTTTGGATATGAGTTCAAATTTTATGTTTGGTTCTATTCCTTCTCAGATGTCTAGACTGGTGAAGCTTCATACTTTGATATTAGATGGAAATTTCTTTAATGGCACTGTCCCGGACTGGTTCGATTCATTATCAAACCTTACTGTTTTGAGCTTAAAGAACAATAGGTTGAAGGGTCCTTTTCCTCCTTCAATATGCAGAGTTACAACACTTAGTGGCATTGCTATGTCTCACAACGAACTTTCCGGTAAATTACCCGATATGAGTAGCTTATATGCTCTACATTTGCTGGATTTAAGGGAGAACCGTTTGGATTCTGAACTACCACTCATGCCCAAAGCATTGACCACTGTTCTTCTGAACAATAACTCAATCCATGGCAAGATTCCCGAAAAACTTAGTTCCCTAGATCACCTTCAACATCTTGATTTGTCACTCAATCTTCTAACCGGAGCACCGCCTGTTGCATTGTTCTCTTTGCCAAACATTAGTTATTTGAATTTAGCATCCAATGAGCTAGGTGGGTCATTTCCTAATGAATTAAGTTGTGGAGATGAACTTGGGTTCGTCGATATTTCAAGTAACAGGTTGATGGGTAGGCTTCCTTCTTGTCTGGGAACCACTTCGGATAAGAGAGTTGTTAAGTTTGGTGGGAATTGCTTGTCCATTGATTCCCAAGATCAGCATCCAGAATCGTACTGCGAAGCCTATATGGAGAAGAGGCAGTCTGGGGGGAAGGCAATGTGGGTGTTAATTGGAGTCATTGGGGGGATTGTAACAATGGTCGTACTGTTAGCACTTGGGCTTCTCATTTCACAAAGAAGATGCTGCTCAAACGGGACAGTGGTGCAGCACCATACGTTGCCAAAGGCTGTAAATGATGTTACACCAACAGGGATTTCTTCTGAACTCCTTGCCAATGCCAGGATCATATCCCAAGCTGCAAAACTAGGGAGACAAGGTTCGAAGGTATACAGAGCGTTTACCTTGGAAGAGTTAGAAGAAGCCACAAATGATTTCGATCAGTCATCGCTGTTGGGTGACGGTTCTATTGGAAAGCTTTACAAGGGAAGATTAGAGAATGGGACCTATACTGCCATAAGATGTCTGCGTTTGTTTAGGAAATATTCAATCCGAAACCTTAAACTTCGTTTGGATTTGCTCTCAAAGCTTCGCCACCCACACCTTGTTAGCCTTTTGGGTCATTGCATTGATGATGTGGGACAAGACAATTCCACTGCTAGCAGACTCTTCCTTGTATATGAATACGTACCTAATGGCAACTTCCGTGCTCATCTCTCTGAAACTTGTCCAGAGAAGGTTCTTAAGTGGTCAGATCGATTGGCAGTACTAATTGGTGTGGCCAAAGCCGTGCACTTTCTACATACTGGGGTAATTCCAGCATCCTTCAGTAACCGATTGAAGACAAACAATATATTGCTTACTGAGCATCGAATTGCAAAGCTGAGTGACTATGGGATGTCCATTGTCACGGAAGAAATAGAAAAAACAGAGGCAAAGGGAGATGGTTCAAGATCACGGCATACACCAAAGGTAGAGGATGATGTTTACAACTTTGGATTCATATTGTTAGAATCACTAGTGGGGCCTGTGGTAAGTGGAAAAGGAGAAGCATTCTTGCTAAATGAAATGGCATCCTTTGGCAGCCAGGATGGTAGGCGACGAATTGTAGATCCAGTCGTGTTAACAACATGCTCGCAGGAATCATTGTCTACAGTAATCTCAATCACCAACAAATGCATATTGCCTGAACCATCAATCCGTCCCTCATTCGAGGATGTGCTTTGGAACTTGCAGTATGCAGCTCAACTTCAGGCCTCGGCCGACTCAGACCAGAGATCTGATGCTGCATCTCACAGTAGTAGTTAG

Network for GWHGAAZE033340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0166

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	165	224	8.00E-08
PF13855.7	LRR_8	257	316	1.90E-09
PF07714.18	PK_Tyr_Ser-Thr	487	745	3.80E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.418
	SRR3591706	second leaf	5.944
	SRR3591707	mature leaf	3.039
	SRR3591708	Shoot apex	6.602
	SRR3591709	Stem	6.135
	SRR3591710	White floral bud	1.711
	SRR3591711	White flower	1.343
	SRR3591712	Green floral bud	2.237
	SRR3591713	Yellow flower	0.377
SRP173429	SRR8316895	Juvenile bud stage	5.242
	SRR8316896	Juvenile bud stage	5.328
	SRR8316897	Juvenile bud stage	3.099
	SRR8316894	Third green stage	2.042
	SRR8316900	Third green stage	3.788
	SRR8316901	Third green stage	3.582
	SRR8316898	Complete white stage	0.128
	SRR8316899	Complete white stage	2.468
	SRR8316903	Complete white stage	0.454
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.051
	SRR8316905	Silver flowering stage	0.025
	SRR8316906	Gold flowering stage	0.081
	SRR8316907	Gold flowering stage	0.070
	SRR8316908	Gold flowering stage	0.087
SRP132670	SRR6706286	Control	1.947
	SRR6706287	Light intensity 50%	1.665
	SRR6706288	Light intensity 20%	1.908
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.704
	CNS0095593	Slightly white alabastrum(diploid) 2	2.802
	CNS0095594	Slightly white alabastrum(diploid) 3	3.766
	CNS0095595	Whole white alabastrum(diploid) 2	3.317
	CNS0095596	Whole white alabastrum(diploid) 3	1.897
	CNS0095597	Whole white alabastrum(diploid) 4	1.944
	CNS0095598	Silvery flower (diploied) 1	6.239
	CNS0095599	Silvery flower (diploied) 2	4.790
	CNS0095600	Silvery flower (diploied) 3	1.778
	CNS0095601	Golden flower (diploid) 1	7.168
	CNS0095602	Golden flower (diploid) 2	4.743
	CNS0095603	Golden flower (diploid) 3	4.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.945
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.293
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.284
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.298
	CNS0095610	Silvery flower (tetraploid) 1	0.106
	CNS0095611	Silvery flower (tetraploid) 2	1.320
	CNS0095612	Silvery flower (tetraploid) 3	0.806
	CNS0095613	Golden flower (tetraploid) 1	0.436
	CNS0095614	Golden flower (tetraploid) 2	0.146
	CNS0095615	Golden flower (tetraploid) 3	0.718
CRA001975	CRR073297	Stem 1	5.410
	CRR073298	Stem 2	4.133
	CRR073299	Stem 3	4.760
	CRR073300	Leaf 1	1.929
	CRR073301	Leaf 2	2.670
	CRR073302	Leaf 3	2.310
	CRR073303	Juvenile bud 1	0.838
	CRR073304	Juvenile bud 2	0.901
	CRR073305	Juvenile bud 3	1.721
	CRR073306	Third green 1	0.050
	CRR073307	Third green 2	0.017
	CRR073308	Third green 3	0.025
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.408
	CRR073316	Gold flowering 2	3.397
	CRR073317	Gold flowering 3	1.335
	CRR073318	Tawny withering 1	4.441
	CRR073319	Tawny withering 2	6.041
	CRR073320	Tawny withering 3	6.342