Detail information of GWHGAAZE033345


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008441351.17.8083E-17PREDICTED: ribulose-phosphate 3-epimerase, cytoplasmic isoform [Cucumis melo]
COGYP_007687679.10.00000006ribulose-5-phosphate 3-epimerase
Swissprottr|Q9SE42|RPE1_ORYSJ2E-16Ribulose-phosphate 3-epimerase, cytoplasmic isoform
trEMBLtr|M0RSG5|M0RSG5_MUSAM2E-17Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P15350_001}
TAIR10AT3G01850.26E-13Aldolase-type TIM barrel family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene51384375138740-
GWHAAZE00000094mRNA51384375138740-
GWHAAZE00000094exon51384375138499-
GWHAAZE00000094exon51386275138740-
GWHAAZE00000094CDS51386275138740-
GWHAAZE00000094CDS51384375138499-
Transcript Sequence

Network for GWHGAAZE033345

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0223


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00834.20Ribul_P_3_epim5421.60E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01783rpe, RPE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Pentose and glucuronate interconversionsmap00040
Carbon fixation in photosynthetic organismsmap00710

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0003824molecular_functioncatalytic activity
GO:0016857molecular_functionracemase and epimerase activity, acting on carbohydrates and derivatives

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.103
SRR3591706second leaf26.668
SRR3591707mature leaf22.000
SRR3591708Shoot apex21.370
SRR3591709Stem41.695
SRR3591710White floral bud52.704
SRR3591711White flower79.732
SRR3591712Green floral bud35.138
SRR3591713Yellow flower60.651
SRP173429 SRR8316895Juvenile bud stage 24.761
SRR8316896Juvenile bud stage 28.109
SRR8316897Juvenile bud stage 12.694
SRR8316894Third green stage 12.017
SRR8316900Third green stage 46.137
SRR8316901Third green stage 46.273
SRR8316898Complete white stage 31.825
SRR8316899Complete white stage 56.149
SRR8316903Complete white stage 30.239
SRR8316902Silver flowering stage37.234
SRR8316904Silver flowering stage41.946
SRR8316905Silver flowering stage24.521
SRR8316906Gold flowering stage 93.034
SRR8316907Gold flowering stage 95.381
SRR8316908Gold flowering stage 105.846
SRP132670SRR6706286Control92.022
SRR6706287Light intensity 50%93.285
SRR6706288Light intensity 20%109.058
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.073
CNS0095593Slightly white alabastrum(diploid) 242.577
CNS0095594Slightly white alabastrum(diploid) 323.174
CNS0095595Whole white alabastrum(diploid) 222.770
CNS0095596Whole white alabastrum(diploid) 323.614
CNS0095597Whole white alabastrum(diploid) 422.698
CNS0095598Silvery flower (diploied) 121.000
CNS0095599Silvery flower (diploied) 229.476
CNS0095600Silvery flower (diploied) 371.507
CNS0095601Golden flower (diploid) 130.668
CNS0095602Golden flower (diploid) 255.996
CNS0095603Golden flower (diploid) 360.724
CNS0095604Slightly white alabastrum(tetraploid) 122.781
CNS0095605Slightly white alabastrum(tetraploid) 217.589
CNS0095606Slightly white alabastrum(tetraploid) 350.618
CNS0095607Whole white alabastrum(tetraploid) 120.134
CNS0095608Whole white alabastrum(tetraploid) 216.601
CNS0095609Whole white alabastrum(tetraploid) 336.862
CNS0095610Silvery flower (tetraploid) 183.735
CNS0095611Silvery flower (tetraploid) 284.716
CNS0095612Silvery flower (tetraploid) 391.978
CNS0095613Golden flower (tetraploid) 147.194
CNS0095614Golden flower (tetraploid) 269.708
CNS0095615Golden flower (tetraploid) 352.266
CRA001975CRR073297Stem 121.185
CRR073298Stem 227.783
CRR073299Stem 323.718
CRR073300Leaf 136.416
CRR073301Leaf 226.829
CRR073302Leaf 331.555
CRR073303Juvenile bud 141.890
CRR073304Juvenile bud 242.949
CRR073305Juvenile bud 339.508
CRR073306Third green 153.779
CRR073307Third green 255.112
CRR073308Third green 350.201
CRR073309Second white 149.362
CRR073310Second white 245.968
CRR073311Second white 337.111
CRR073312Silver flowering 140.676
CRR073313Silver flowering 230.954
CRR073314Silver flowering 330.891
CRR073315Gold flowering 116.057
CRR073316Gold flowering 213.478
CRR073317Gold flowering 314.691
CRR073318Tawny withering 122.492
CRR073319Tawny withering 227.592
CRR073320Tawny withering 315.431