Detail information of GWHGAAZE033358


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097278.10PREDICTED: ribonucleoside-diphosphate reductase small chain [Sesamum indicum]
COGYP_006255029.17E-169ribonucleotide reductase subunit beta
Swissprottr|P49730|RIR2_TOBAC0Ribonucleoside-diphosphate reductase small chain
trEMBLtr|A0A067FZP6|A0A067FZP6_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO68932.1}
TAIR10AT3G27060.11E-161Ferritin/ribonucleotide reductase-like family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene52981995299188+
GWHAAZE00000094mRNA52981995299188+
GWHAAZE00000094exon52981995299188+
GWHAAZE00000094CDS52981995299188+
Transcript Sequence

Network for GWHGAAZE033358

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00268.22Ribonuc_red_sm162822.20E-117
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10808RRM2 Metabolic pathways map01100
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480
Drug metabolism - other enzymesmap00983
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName
GO:0009263biological_processdeoxyribonucleotide biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0005971cellular_componentribonucleoside-diphosphate reductase complex
GO:0016491molecular_functionoxidoreductase activity
GO:0004748molecular_functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.580
SRR3591706second leaf13.299
SRR3591707mature leaf3.572
SRR3591708Shoot apex82.670
SRR3591709Stem28.671
SRR3591710White floral bud5.613
SRR3591711White flower4.173
SRR3591712Green floral bud15.846
SRR3591713Yellow flower2.054
SRP173429 SRR8316895Juvenile bud stage 12.126
SRR8316896Juvenile bud stage 10.197
SRR8316897Juvenile bud stage 4.766
SRR8316894Third green stage 3.017
SRR8316900Third green stage 6.629
SRR8316901Third green stage 4.996
SRR8316898Complete white stage 0.836
SRR8316899Complete white stage 4.131
SRR8316903Complete white stage 1.131
SRR8316902Silver flowering stage0.684
SRR8316904Silver flowering stage0.788
SRR8316905Silver flowering stage0.328
SRR8316906Gold flowering stage 0.997
SRR8316907Gold flowering stage 0.440
SRR8316908Gold flowering stage 0.492
SRP132670SRR6706286Control4.852
SRR6706287Light intensity 50%6.092
SRR6706288Light intensity 20%7.650
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.838
CNS0095593Slightly white alabastrum(diploid) 210.728
CNS0095594Slightly white alabastrum(diploid) 323.086
CNS0095595Whole white alabastrum(diploid) 24.973
CNS0095596Whole white alabastrum(diploid) 32.064
CNS0095597Whole white alabastrum(diploid) 44.002
CNS0095598Silvery flower (diploied) 15.377
CNS0095599Silvery flower (diploied) 28.880
CNS0095600Silvery flower (diploied) 34.125
CNS0095601Golden flower (diploid) 17.427
CNS0095602Golden flower (diploid) 22.917
CNS0095603Golden flower (diploid) 32.955
CNS0095604Slightly white alabastrum(tetraploid) 110.658
CNS0095605Slightly white alabastrum(tetraploid) 29.102
CNS0095606Slightly white alabastrum(tetraploid) 321.158
CNS0095607Whole white alabastrum(tetraploid) 18.788
CNS0095608Whole white alabastrum(tetraploid) 24.803
CNS0095609Whole white alabastrum(tetraploid) 37.095
CNS0095610Silvery flower (tetraploid) 10.429
CNS0095611Silvery flower (tetraploid) 21.862
CNS0095612Silvery flower (tetraploid) 31.266
CNS0095613Golden flower (tetraploid) 10.568
CNS0095614Golden flower (tetraploid) 20.542
CNS0095615Golden flower (tetraploid) 30.394
CRA001975CRR073297Stem 119.211
CRR073298Stem 215.221
CRR073299Stem 333.255
CRR073300Leaf 15.108
CRR073301Leaf 24.627
CRR073302Leaf 34.588
CRR073303Juvenile bud 16.503
CRR073304Juvenile bud 22.639
CRR073305Juvenile bud 33.135
CRR073306Third green 10.618
CRR073307Third green 20.084
CRR073308Third green 31.241
CRR073309Second white 10.527
CRR073310Second white 20.792
CRR073311Second white 30.673
CRR073312Silver flowering 10.209
CRR073313Silver flowering 21.132
CRR073314Silver flowering 31.414
CRR073315Gold flowering 15.999
CRR073316Gold flowering 25.219
CRR073317Gold flowering 38.495
CRR073318Tawny withering 138.718
CRR073319Tawny withering 223.556
CRR073320Tawny withering 356.126