Gene detail

Detail information of GWHGAAZE033361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002509510.1	0	ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
COG	YP_003090974.1	4E-169	ribonucleoside-diphosphate reductase
Swissprot	tr\|P49730\|RIR2_TOBAC	0	Ribonucleoside-diphosphate reductase small chain
trEMBL	tr\|B9RBH6\|B9RBH6_RICCO	0	Ribonucleoside-diphosphate reductase small chain, putative {ECO:0000313\|EMBL:EEF50897.1}
TAIR10	AT3G27060.1	2E-163	Ferritin/ribonucleotide reductase-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	5318461	5319453	+
GWHAAZE00000094	mRNA	5318461	5319453	+
GWHAAZE00000094	exon	5318461	5319453	+
GWHAAZE00000094	CDS	5318461	5319453	+

Transcript Sequence
>GWHTAAZE033400 ATGCCATCAATTCCCGAAGAACCATTACTGGAACCAAACCCTGATCGATTTTGTATGTTCCCAATTCAATATCCCCAAATTTGGGAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTCTCCCAGGACCTTCGTCACTGGGAAGAAACCCTAACCCCGGACGAAAGACACTTCATTACTCACGTCCTCGCCTTCTTTGCCGCCTCCGACGGCATCGTTTTGGAGAACCTCGCCGGCCGCTTCATGAAGGAGGTCCAAGTCTCCGAAGCCCGTGCCTTTTACGGCTTCCAAATTGCCATCGAGAATATCCACTCCGAGATGTACAGCCTTCTACTCGAAACTTACATCAAAGACTCCAACGAGAAGACCCGACTCTTTCGTGCGATACAGACCATCCCCTGCATTGAGAAGAAGGCCAAGTGGGCCCTCCGGTGGATCGACGGTGCAGAATCATTCAAGGAGAGGTTGGTTGCTTTTGCCTGCGTGGAAGGGATATTCTTCTCTGGGAGTTTTTGTGCCATATTTTGGTTGAAAAAGCGCGGTTTAATGCCCGGACTGACTTTCTCTAACGAACTAATATCGCGAGATGAAGGGTTGCACTGTGACTTTGCGTGTTTGCTGTATGGGCTGATGAGGATGAAGCCGAGCGAGGAGCGAGTGAAGGGAATTGTGGCTGATGCAGTGGAGATTGAGAAAGAGTTCGTGTGTGATGCATTGCCCTGCGCCTTGGTGGGAATGAATGGTGATCTGATGAGCCAGTACATAGAATTCGTGGCCGATAGGTTGCTGGGTGCTTTGGGATGTGGTAAAATGTACAATGTGCATAACCCATTTGATTGGATGGAGTTGATTTCATTGCAGGGGAAGACTAACTTCTTCGAGAAGAGGGTGGGTGAGTACCAAAAGGCTTCTGTAATGTCAAGTATAAATGGGAATGCTGATTCTCATGTCTTTAAGATGGATGAGGACTTTTGA

Network for GWHGAAZE033361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00268.22	Ribonuc_red_sm	16	283	7.70E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10808	RRM2	Metabolic pathways	map01100
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Glutathione metabolism	map00480
		Drug metabolism - other enzymes	map00983
		p53 signaling pathway	map04115

Gene Ontology

GO term	Ontology	Name
GO:0009263	biological_process	deoxyribonucleotide biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005971	cellular_component	ribonucleoside-diphosphate reductase complex
GO:0004748	molecular_function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.856
	SRR3591706	second leaf	19.813
	SRR3591707	mature leaf	12.705
	SRR3591708	Shoot apex	21.812
	SRR3591709	Stem	12.642
	SRR3591710	White floral bud	18.483
	SRR3591711	White flower	20.579
	SRR3591712	Green floral bud	20.723
	SRR3591713	Yellow flower	10.798
SRP173429	SRR8316895	Juvenile bud stage	12.595
	SRR8316896	Juvenile bud stage	16.896
	SRR8316897	Juvenile bud stage	4.815
	SRR8316894	Third green stage	7.762
	SRR8316900	Third green stage	28.644
	SRR8316901	Third green stage	26.007
	SRR8316898	Complete white stage	9.901
	SRR8316899	Complete white stage	25.651
	SRR8316903	Complete white stage	16.533
	SRR8316902	Silver flowering stage	10.729
	SRR8316904	Silver flowering stage	12.121
	SRR8316905	Silver flowering stage	5.680
	SRR8316906	Gold flowering stage	14.866
	SRR8316907	Gold flowering stage	13.156
	SRR8316908	Gold flowering stage	16.437
SRP132670	SRR6706286	Control	26.468
	SRR6706287	Light intensity 50%	27.623
	SRR6706288	Light intensity 20%	29.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.194
	CNS0095593	Slightly white alabastrum(diploid) 2	18.758
	CNS0095594	Slightly white alabastrum(diploid) 3	14.924
	CNS0095595	Whole white alabastrum(diploid) 2	15.941
	CNS0095596	Whole white alabastrum(diploid) 3	16.529
	CNS0095597	Whole white alabastrum(diploid) 4	16.012
	CNS0095598	Silvery flower (diploied) 1	16.512
	CNS0095599	Silvery flower (diploied) 2	12.732
	CNS0095600	Silvery flower (diploied) 3	16.630
	CNS0095601	Golden flower (diploid) 1	12.295
	CNS0095602	Golden flower (diploid) 2	14.477
	CNS0095603	Golden flower (diploid) 3	15.332
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.702
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.879
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.741
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.339
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.910
	CNS0095610	Silvery flower (tetraploid) 1	23.219
	CNS0095611	Silvery flower (tetraploid) 2	22.581
	CNS0095612	Silvery flower (tetraploid) 3	24.385
	CNS0095613	Golden flower (tetraploid) 1	10.999
	CNS0095614	Golden flower (tetraploid) 2	15.146
	CNS0095615	Golden flower (tetraploid) 3	9.830
CRA001975	CRR073297	Stem 1	25.704
	CRR073298	Stem 2	31.622
	CRR073299	Stem 3	34.696
	CRR073300	Leaf 1	27.839
	CRR073301	Leaf 2	34.002
	CRR073302	Leaf 3	35.788
	CRR073303	Juvenile bud 1	29.635
	CRR073304	Juvenile bud 2	37.216
	CRR073305	Juvenile bud 3	38.923
	CRR073306	Third green 1	29.415
	CRR073307	Third green 2	21.667
	CRR073308	Third green 3	23.686
	CRR073309	Second white 1	29.939
	CRR073310	Second white 2	18.081
	CRR073311	Second white 3	15.921
	CRR073312	Silver flowering 1	12.943
	CRR073313	Silver flowering 2	18.031
	CRR073314	Silver flowering 3	14.442
	CRR073315	Gold flowering 1	29.616
	CRR073316	Gold flowering 2	32.210
	CRR073317	Gold flowering 3	41.629
	CRR073318	Tawny withering 1	21.024
	CRR073319	Tawny withering 2	12.671
	CRR073320	Tawny withering 3	20.571