Detail information of GWHGAAZE033381


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002275712.20PREDICTED: RING finger protein 10 isoform X1 [Vitis vinifera]
Swissprottr|O64425|RMA1_ARATH0.000004E3 ubiquitin-protein ligase RMA1
trEMBLtr|A0A061EE74|A0A061EE74_THECC0RING/U-box superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOY02948.1}
TAIR10AT3G26730.12E-171RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene60595806070551-
GWHAAZE00000094mRNA60595806070551-
GWHAAZE00000094exon60703326070551-
GWHAAZE00000094exon60699256069971-
GWHAAZE00000094exon60684216069704-
GWHAAZE00000094exon60680166068104-
GWHAAZE00000094exon60673816067483-
GWHAAZE00000094exon60664576066561-
GWHAAZE00000094exon60651986065312-
GWHAAZE00000094exon60598276060003-
GWHAAZE00000094exon60595806059740-
GWHAAZE00000094CDS60703326070551-
GWHAAZE00000094CDS60699256069971-
GWHAAZE00000094CDS60684216069704-
GWHAAZE00000094CDS60680166068104-
GWHAAZE00000094CDS60673816067483-
GWHAAZE00000094CDS60664576066561-
GWHAAZE00000094CDS60651986065312-
GWHAAZE00000094CDS60598276060003-
GWHAAZE00000094CDS60595806059740-
Transcript Sequence

Network for GWHGAAZE033381

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC42442903.90E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.332
SRR3591706second leaf24.222
SRR3591707mature leaf32.771
SRR3591708Shoot apex25.036
SRR3591709Stem49.107
SRR3591710White floral bud52.945
SRR3591711White flower59.929
SRR3591712Green floral bud42.578
SRR3591713Yellow flower75.026
SRP173429 SRR8316895Juvenile bud stage 30.622
SRR8316896Juvenile bud stage 43.831
SRR8316897Juvenile bud stage 22.208
SRR8316894Third green stage 20.383
SRR8316900Third green stage 50.586
SRR8316901Third green stage 47.350
SRR8316898Complete white stage 23.970
SRR8316899Complete white stage 64.911
SRR8316903Complete white stage 46.785
SRR8316902Silver flowering stage33.796
SRR8316904Silver flowering stage53.521
SRR8316905Silver flowering stage23.524
SRR8316906Gold flowering stage 72.440
SRR8316907Gold flowering stage 76.045
SRR8316908Gold flowering stage 90.577
SRP132670SRR6706286Control33.621
SRR6706287Light intensity 50%36.047
SRR6706288Light intensity 20%40.423
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.138
CNS0095593Slightly white alabastrum(diploid) 224.935
CNS0095594Slightly white alabastrum(diploid) 323.084
CNS0095595Whole white alabastrum(diploid) 225.271
CNS0095596Whole white alabastrum(diploid) 324.666
CNS0095597Whole white alabastrum(diploid) 424.043
CNS0095598Silvery flower (diploied) 136.761
CNS0095599Silvery flower (diploied) 234.659
CNS0095600Silvery flower (diploied) 370.682
CNS0095601Golden flower (diploid) 131.795
CNS0095602Golden flower (diploid) 263.238
CNS0095603Golden flower (diploid) 360.938
CNS0095604Slightly white alabastrum(tetraploid) 130.755
CNS0095605Slightly white alabastrum(tetraploid) 224.566
CNS0095606Slightly white alabastrum(tetraploid) 348.668
CNS0095607Whole white alabastrum(tetraploid) 120.852
CNS0095608Whole white alabastrum(tetraploid) 219.687
CNS0095609Whole white alabastrum(tetraploid) 343.012
CNS0095610Silvery flower (tetraploid) 172.464
CNS0095611Silvery flower (tetraploid) 260.038
CNS0095612Silvery flower (tetraploid) 353.432
CNS0095613Golden flower (tetraploid) 148.008
CNS0095614Golden flower (tetraploid) 265.535
CNS0095615Golden flower (tetraploid) 367.626
CRA001975CRR073297Stem 128.668
CRR073298Stem 224.752
CRR073299Stem 322.190
CRR073300Leaf 129.777
CRR073301Leaf 230.001
CRR073302Leaf 324.359
CRR073303Juvenile bud 124.672
CRR073304Juvenile bud 224.163
CRR073305Juvenile bud 332.579
CRR073306Third green 121.487
CRR073307Third green 222.236
CRR073308Third green 322.927
CRR073309Second white 116.742
CRR073310Second white 224.719
CRR073311Second white 333.182
CRR073312Silver flowering 120.071
CRR073313Silver flowering 220.557
CRR073314Silver flowering 316.790
CRR073315Gold flowering 114.593
CRR073316Gold flowering 222.882
CRR073317Gold flowering 314.257
CRR073318Tawny withering 120.785
CRR073319Tawny withering 221.954
CRR073320Tawny withering 324.668