Gene detail

Detail information of GWHGAAZE033386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG01541.1	4.68328E-57	Topless-related 1 -like protein [Gossypium arboreum]
COG	YP_005069990.1	0.000000008	serine/threonine protein kinase with WD-40 repeats
Swissprot	tr\|Q0WV90\|TPR1_ARATH	5E-48	Topless-related protein 1
trEMBL	tr\|D7SV18\|D7SV18_VITVI	6E-53	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI21117.3}
TAIR10	AT1G80490.1	7E-46	TOPLESS-related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000093	gene	24105	36630	+
GWHAAZE00000093	mRNA	24105	36630	+
GWHAAZE00000093	exon	24105	24181	+
GWHAAZE00000093	exon	24260	24439	+
GWHAAZE00000093	exon	25616	25742	+
GWHAAZE00000093	exon	25869	25995	+
GWHAAZE00000093	exon	26340	26410	+
GWHAAZE00000093	exon	26663	26741	+
GWHAAZE00000093	exon	26858	26931	+
GWHAAZE00000093	exon	27437	27532	+
GWHAAZE00000093	exon	27654	27749	+
GWHAAZE00000093	exon	28277	28392	+
GWHAAZE00000093	exon	33220	33285	+
GWHAAZE00000093	exon	33364	33543	+
GWHAAZE00000093	exon	33630	33743	+
GWHAAZE00000093	exon	34703	34829	+
GWHAAZE00000093	exon	34953	35079	+
GWHAAZE00000093	exon	35423	35493	+
GWHAAZE00000093	exon	36517	36630	+
GWHAAZE00000093	CDS	24105	24181	+
GWHAAZE00000093	CDS	24260	24439	+
GWHAAZE00000093	CDS	25616	25742	+
GWHAAZE00000093	CDS	25869	25995	+
GWHAAZE00000093	CDS	26340	26410	+
GWHAAZE00000093	CDS	26663	26741	+
GWHAAZE00000093	CDS	26858	26931	+
GWHAAZE00000093	CDS	27437	27532	+
GWHAAZE00000093	CDS	27654	27749	+
GWHAAZE00000093	CDS	28277	28392	+
GWHAAZE00000093	CDS	33220	33285	+
GWHAAZE00000093	CDS	33364	33543	+
GWHAAZE00000093	CDS	33630	33743	+
GWHAAZE00000093	CDS	34703	34829	+
GWHAAZE00000093	CDS	34953	35079	+
GWHAAZE00000093	CDS	35423	35493	+
GWHAAZE00000093	CDS	36517	36630	+

Transcript Sequence
>GWHTAAZE033425 ATGTCTCTTAGAAAAGAGCTTATTTTCTTGGTCTTACAGTTCTGTGATGAGGAAGACCTCAAGAAAACTGCTCACGTGTTTGAGGAGGAAACAGGTATTTTCTTTGACATGATGCATTTTGAGAACTTGGTGCTTGGTGGTAATTTGGATGAGGCCGAAAGATATCTTTTGTGTTTCATCGGAATCCACGATGATAAAATTTCGATCAAGATTTATTTTGAAATTAGGAAGCAGAAGTTTCTCGAGGCACTTGATCACTTAAATTTGCAGCATATTAATTGCATTTATCCTCGGACAGATCGTGAGATGAAAACCCTTTTTATTGATCATCAATGCCAACTACCTGATCATTCACATGGACAATCCACTGAGAACAACCCATTGCCTTCCAAAGACACATCTGCATTAGTATCACCTTTCTCTGGAATGTCAAATTTTAATCCATCGCGTACTGAAACTCTATCCCCAATTTCTGATGGAGTGCTCAATCCCCAATTTCTAACCAATCCAGATGTGACTTCTGATAGTACCAAGGAAACTGACAGCACAGCTGAAACAAGGTCCGTGGGGATGTTGAATGAGACTGTTGGATGGAACTTGGAACCGGGATCTTTTTCGACAATAGTGGATTTCCACCCTATTCAACAGAACCTTCTGCTAGTTGGAACCGATATTGGTGGCTTTGAGTTATGGGAAATTATCTCTGAGCAGAAGTTACTTTCAAGAGAACATAAGATTGAAGCTCATGTTGACGGTGTTAATGATCTTGTGTTCTTTAAACCAAATGAGCAACATTATGTCATAACGTGCGGTGATGACAAGCTTATCAAGGTGTGGGATGTCACTACCGGTGTCAAGCAATATGTTTTCGAAGGTCACGAGGCCCCGATTTATTCAATGTGCTCTCATGTGAGCAACGGAATTCATTCTGGCACAAGTAAGAATAAGTTTTTGGCTGCTGGTGATGAACATTTAATCAAAGTTTGGGATATGAATAATGTTGAACTTCTTGCAACTATTGATGCAGATGGAGAATTGGTGTCAAAAGAGCTTATTTTCTTGATCTTACAGTTCTGTGATGAGGAAGACCTCAAGAAAACTGCTCACGTGTTTGAGGAGGAAACAGGTATTTTCTTTGACATGATGCATTTTGAGAACTTGGTGCTTGGTGGTAATTTGGATGAGGCCGAAAGATATCTTTTGTGTTTCATCGGAATCCACGATGATAAAATTTCGATCAAGATTTATTTTGAAATTAGGAAGCAGAAGTTTCTCGAGGCACTTGATCATGATGATCGTGTAAAGGCTTTAGATATTCTTTTGAAAGATCTAAAAGTTTTCACCTCATCAAATGAGGTGCTATACAAGGAGATGACTCTGCTTCTTACATTACGTGATTTTAGCTTAAATTTGCAGCATATTAATTGCATTTATCCTCGGACAGATCGTGAGATGAAAACCCTTTTTATTGATCATCAATGCCAACTACCTGATCATTCACATGGACAATCCACTGAGAACAACCCATTGCCTTCCAAAGACACATCTGCATTAGTATCACCTTTCTCTGGAATGTCAAATTTTAATCCATCGCGTACTGAAACTCTATCCCCAATTTCTGATGGAGTGCTCAATCCCCAATTTCTAACCAATCCAGATGTGACTTCTGATAGTACCAAGGAAACTGACAGCACAGCTGAAACAAGGTCCGTGGGGATGTTGAATGAGATTGAAGCTCATGTTGGCGGTGTCAATGATCTTGCATTATCCAAACCAAATGAGCAACTTTATGTCATAACGTGCGGTGATGACAAGTTTATCAGGGTTAGATTCGCACTTTAA

Network for GWHGAAZE033386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	244	280	0.0038
PF00400.33	WD40	286	330	0.023

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.023
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.099
	SRR3591710	White floral bud	2.536
	SRR3591711	White flower	0.371
	SRR3591712	Green floral bud	1.143
	SRR3591713	Yellow flower	0.276
SRP173429	SRR8316895	Juvenile bud stage	0.870
	SRR8316896	Juvenile bud stage	0.470
	SRR8316897	Juvenile bud stage	0.060
	SRR8316894	Third green stage	0.897
	SRR8316900	Third green stage	1.128
	SRR8316901	Third green stage	1.251
	SRR8316898	Complete white stage	0.171
	SRR8316899	Complete white stage	2.391
	SRR8316903	Complete white stage	0.556
	SRR8316902	Silver flowering stage	0.571
	SRR8316904	Silver flowering stage	0.992
	SRR8316905	Silver flowering stage	0.084
	SRR8316906	Gold flowering stage	0.227
	SRR8316907	Gold flowering stage	0.610
	SRR8316908	Gold flowering stage	0.187
SRP132670	SRR6706286	Control	1.137
	SRR6706287	Light intensity 50%	0.951
	SRR6706288	Light intensity 20%	1.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.882
	CNS0095593	Slightly white alabastrum(diploid) 2	0.922
	CNS0095594	Slightly white alabastrum(diploid) 3	0.831
	CNS0095595	Whole white alabastrum(diploid) 2	1.722
	CNS0095596	Whole white alabastrum(diploid) 3	0.938
	CNS0095597	Whole white alabastrum(diploid) 4	0.737
	CNS0095598	Silvery flower (diploied) 1	1.347
	CNS0095599	Silvery flower (diploied) 2	0.817
	CNS0095600	Silvery flower (diploied) 3	0.571
	CNS0095601	Golden flower (diploid) 1	0.567
	CNS0095602	Golden flower (diploid) 2	0.534
	CNS0095603	Golden flower (diploid) 3	0.472
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.462
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.181
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.758
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.186
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.174
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.409
	CNS0095610	Silvery flower (tetraploid) 1	0.462
	CNS0095611	Silvery flower (tetraploid) 2	0.661
	CNS0095612	Silvery flower (tetraploid) 3	0.032
	CNS0095613	Golden flower (tetraploid) 1	0.213
	CNS0095614	Golden flower (tetraploid) 2	0.530
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	0.172
	CRR073298	Stem 2	0.341
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.438
	CRR073301	Leaf 2	0.878
	CRR073302	Leaf 3	0.036
	CRR073303	Juvenile bud 1	0.017
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.038
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.029
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.098
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.014
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000