Gene detail

Detail information of GWHGAAZE033390

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP33373.1	hypothetical protein JCGZ_12922 [Jatropha curcas]
COG	YP_006371119.1	protein GroL
Swissprot	tr\|Q05046\|CH62_CUCMA	Chaperonin CPN60-2, mitochondrial (Precursor)
trEMBL	tr\|A0A061EK53\|A0A061EK53_THECC	Heat shock protein 60 isoform 1 {ECO:0000313\|EMBL:EOY05430.1}
TAIR10	AT3G23990.1	heat shock protein 60

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000093	gene	134812	147182	+
GWHAAZE00000093	mRNA	134812	147182	+
GWHAAZE00000093	exon	134812	134983	+
GWHAAZE00000093	exon	135095	135119	+
GWHAAZE00000093	exon	136725	136884	+
GWHAAZE00000093	exon	137347	137522	+
GWHAAZE00000093	exon	137835	137930	+
GWHAAZE00000093	exon	140636	140740	+
GWHAAZE00000093	exon	141135	141221	+
GWHAAZE00000093	exon	141313	141402	+
GWHAAZE00000093	exon	142277	142369	+
GWHAAZE00000093	exon	142525	142620	+
GWHAAZE00000093	exon	143253	143352	+
GWHAAZE00000093	exon	145258	145361	+
GWHAAZE00000093	exon	145507	145612	+
GWHAAZE00000093	exon	146884	146962	+
GWHAAZE00000093	exon	147068	147182	+
GWHAAZE00000093	five_prime_UTR	134812	134945	+
GWHAAZE00000093	CDS	134946	134983	+
GWHAAZE00000093	CDS	135095	135119	+
GWHAAZE00000093	CDS	136725	136884	+
GWHAAZE00000093	CDS	137347	137522	+
GWHAAZE00000093	CDS	137835	137930	+
GWHAAZE00000093	CDS	140636	140740	+
GWHAAZE00000093	CDS	141135	141221	+
GWHAAZE00000093	CDS	141313	141402	+
GWHAAZE00000093	CDS	142277	142369	+
GWHAAZE00000093	CDS	142525	142620	+
GWHAAZE00000093	CDS	143253	143352	+
GWHAAZE00000093	CDS	145258	145361	+
GWHAAZE00000093	CDS	145507	145612	+
GWHAAZE00000093	CDS	146884	146962	+
GWHAAZE00000093	CDS	147068	147182	+

Transcript Sequence
>GWHTAAZE033429 TGTTGCTTCTACTTATTCTAGACCCTTCTCTCTTCCCCTATTTTACCCATCTCTGTTCTTCCCCAAATCAATCAAAACTCTACGTCGCAATAGATTCTGTATAACAATCCAATTGCAAAAGGGTCGTAACAAAAATGTACCGTTTTGCTGCAAACCTTGCCTCTAAAGCTCGGGTCGCTAAAAGTAGTACCCAGCAGGGGCGTAATGTTGTAATTGAACAAAGTTTTGGGGCCCCAAAAGTGACAAAAGATGGCGTAACTGTGGCAAAGAGCATTGAATTCAAGGACAGAGTCAAAAATATTGGTGCAAGCCTCAGAAAGCAAGTCGCCAATGCGACAAATGATGTAGCTGGTGATGGTACTACTTGTGCAACAGTCCTCACACGTGCAATTTTCACCGAAGGGTGCAAGTCAGTTGCAGCCGGTATGAATGCAATGGACCTTAGACGGGGTATTACCATGGCAATTGATTCTGTGGTAACAAACTTGAAGAGCAGGACTCGAATGATAAGCACGTCTGAAGAAATAGCACAGGTTGGGACAATATCGGCAAATGGAGAAAGAGAAATTGGTGAGTTGATTGCAAAGGCCATGGAGAAAGTTGGCAAAGAGGGAGTAATCACAATTCAAGATGGGAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGAATGAAGCTGGACCGTGGCTATATATCTCCATATTTCATCACAAACCAGAAAAACCAGAAATGCGAACTAGACGACCCTCTCATTCTAATCCATGAGAAGAAAATCTCAAGCATAAATGCTGTGGTGAAAGTACTGGAGTTGGCATTGAAGAAACAAAGGCCACTGTTGATTGTGGCTGAAGATGTGGAAAGCGAAGCACTTGCAACACTCATCCTTAATAAGATTCGAGCTGGAATTAAGGGAATTCTTGCTTTAGGCCACAATATCGGCGATCACACCATTATTCTCGATGGTGCTGGTGAGAAGACCGCCATAGAGGAAAGATGTGAACAGATTAGGTCAGCGATCGAATTGAGCACTTCTGATTATGACAAGGAGAAGTTGCAAGATAGATTAGCAAAGCTTTCTGGTGGTGTTGCTGTGTTGAAGATTGGAGGAGCAAGTGAAACCGAAGTTAGTGAGAAGAAAGATAGGGTTACAGATGCTCTAAATGCCACAAAGGCAGCTGTGGAGGAAGGAATTGTGCCTGGTGGCGGTGTTGCTCTTCTTTATGCATCGAAAGAGTTAGACAAGTTGCCAACAGCCAATTTTGATCAGAAGATTGGTGTGCAGATTATTCAGAACGCTCTAAAGACACCGGTGCATACAATTGCTTCTAATGCCGGAGTAGAGGGAGCAGTGGTTGTTGGCAAGCTGTTGGAGCAAGACAACCCTGATCTTGGATATGATGCAGCCAAAGGTGAATATGTAGATATGGTAAAAGCCGGAATCATCGACCCGTTGAAAGTAATAAAAACAGCATTGGTTGACGCAGCAAGTGTGGCATCTTTATTGACGACCACGGAAGCTGTGGTGGTTGAGCTTCCAAAGGATGATAAAGAAATACCGGCAATGGGCGGAGGTATGGGCGGCATGGGTGGCATGGATTATTGA

Network for GWHGAAZE033390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	21	466	4.00E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0042026	biological_process	protein refolding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.462
	SRR3591706	second leaf	1.816
	SRR3591707	mature leaf	2.185
	SRR3591708	Shoot apex	16.702
	SRR3591709	Stem	5.421
	SRR3591710	White floral bud	3.001
	SRR3591711	White flower	8.340
	SRR3591712	Green floral bud	8.476
	SRR3591713	Yellow flower	2.555
SRP173429	SRR8316895	Juvenile bud stage	23.910
	SRR8316896	Juvenile bud stage	31.184
	SRR8316897	Juvenile bud stage	12.822
	SRR8316894	Third green stage	8.636
	SRR8316900	Third green stage	28.251
	SRR8316901	Third green stage	19.010
	SRR8316898	Complete white stage	1.348
	SRR8316899	Complete white stage	15.170
	SRR8316903	Complete white stage	3.856
	SRR8316902	Silver flowering stage	3.797
	SRR8316904	Silver flowering stage	4.113
	SRR8316905	Silver flowering stage	1.709
	SRR8316906	Gold flowering stage	11.359
	SRR8316907	Gold flowering stage	12.907
	SRR8316908	Gold flowering stage	8.551
SRP132670	SRR6706286	Control	22.113
	SRR6706287	Light intensity 50%	21.457
	SRR6706288	Light intensity 20%	22.738
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.292
	CNS0095593	Slightly white alabastrum(diploid) 2	23.312
	CNS0095594	Slightly white alabastrum(diploid) 3	18.586
	CNS0095595	Whole white alabastrum(diploid) 2	18.410
	CNS0095596	Whole white alabastrum(diploid) 3	18.637
	CNS0095597	Whole white alabastrum(diploid) 4	11.206
	CNS0095598	Silvery flower (diploied) 1	12.633
	CNS0095599	Silvery flower (diploied) 2	14.111
	CNS0095600	Silvery flower (diploied) 3	12.468
	CNS0095601	Golden flower (diploid) 1	8.807
	CNS0095602	Golden flower (diploid) 2	10.745
	CNS0095603	Golden flower (diploid) 3	9.457
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.722
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.272
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.325
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.697
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.769
	CNS0095610	Silvery flower (tetraploid) 1	15.632
	CNS0095611	Silvery flower (tetraploid) 2	13.248
	CNS0095612	Silvery flower (tetraploid) 3	7.791
	CNS0095613	Golden flower (tetraploid) 1	6.613
	CNS0095614	Golden flower (tetraploid) 2	9.213
	CNS0095615	Golden flower (tetraploid) 3	1.116
CRA001975	CRR073297	Stem 1	28.633
	CRR073298	Stem 2	24.184
	CRR073299	Stem 3	24.132
	CRR073300	Leaf 1	16.257
	CRR073301	Leaf 2	17.721
	CRR073302	Leaf 3	17.293
	CRR073303	Juvenile bud 1	14.969
	CRR073304	Juvenile bud 2	6.195
	CRR073305	Juvenile bud 3	15.826
	CRR073306	Third green 1	1.612
	CRR073307	Third green 2	0.699
	CRR073308	Third green 3	0.844
	CRR073309	Second white 1	5.047
	CRR073310	Second white 2	5.813
	CRR073311	Second white 3	3.253
	CRR073312	Silver flowering 1	0.706
	CRR073313	Silver flowering 2	1.427
	CRR073314	Silver flowering 3	1.342
	CRR073315	Gold flowering 1	5.847
	CRR073316	Gold flowering 2	8.245
	CRR073317	Gold flowering 3	3.568
	CRR073318	Tawny withering 1	9.243
	CRR073319	Tawny withering 2	9.563
	CRR073320	Tawny withering 3	12.933