Gene detail

Detail information of GWHGAAZE033392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010268496.1	2.84405E-33	PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X3 [Nelumbo nucifera]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	7E-28	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|F6I3R8\|F6I3R8_VITVI	1E-33	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61586.1}
TAIR10	AT3G06240.1	7E-22	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000093	gene	154445	155659	-
GWHAAZE00000093	mRNA	154445	155659	-
GWHAAZE00000093	exon	154445	155659	-
GWHAAZE00000093	CDS	154445	155659	-

Transcript Sequence
>GWHTAAZE033431 ATGGGAAGAAGAAATCGAGCAGCACCCAAAGCAGTCGCAGTGGCAGCAAGTAAAAAAGAACCAATAACCATGGCTACTCCTTTCTTTCCGCAAGAAATCATTGAGGCGATCCTTTTAAAGTTGCCTGCCAAATCACTACTTCGTTTCAGCACGGTATGCAAGCTTTGGCATTCTTTAATTTTCGATCCCAATTTCGTTGCACTGCACCTTAATCAATCCAATCATCACCACAACCTTATTCTTAGATCCAAGTCTAGCACTAATTTAATTTTTCTTGACTACGACTTCAACGCCAAGCGTCGTCGGTTTCCACTACCAGCTGCTAAAGGTATTAAGGTCATTGGGTCTATCAATGGCTTGTTATGTGTAGCTTTAGGGGAATCCCCCATTGTGCTGTGGAATCCGTTGTCAGATAATTGCAACACTTTACCCGACTCAAACTTCATTAAAGGAATTGCCAATAACGTATTGGGTTTTGGTTATGATTCCTCCATTGACGATTACAAAATCGTAAAGGTATTTACTCCATATATGAGGCTGCAGAATAAATTCGAAATCTACTCGCTTAGAACAAATACATGGAAAAAGGTGGAATTGAAGAATATGTCTACTACTTTATCTTTTATAACACCGTGTATTGGGACCCATGTTAATGGGTCTATTTATTGGTATGTGACGCAAATTCTTGAGGATGAGGGTGAGCTTATTCCATTGATTGCTTGCTTTGATTTGAAAGATGAGAAATTTAGATACTTAGAATTGCCTCACGACTTGATGGATGAAGAAATTAAAGAAGATGAATTGCCTGATGAGATACAAAGTTCACACACATTCATTACTCCAACGAGGGATATACGTCTCATTGATGAGATGGGACGCCTTGCCCTGATCCAGGGCTCCTCTGAACTCCATGAAGCGTGCCTTTGGACTCTGAAAGAAGATAATGTTTGGAGCGAGAAGACGGTAATATGCCACCCTACTTACATGTTTCCCAAGCCCATATTTTTTATAAATACCGGCAACATCCTCATGAAGTGCAAAGGCGTATGGAATGAAATTGAGAGAAAGGAAAACTATTTGGCCTTGTACAATAAGGAAAAAGAATCATTCTCGGACGATTTTAGTTTTGATGCTTATAGTTGGGCTTTTGCTGCGGTATATATTGAGACTCTTATTTCTCCTTATAATGGTGCTGGCTTAATAGGCAAGATTTGA

Network for GWHGAAZE033392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	30	66	5.50E-08
PF08268.13	FBA_3	216	326	6.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.028
	SRR3591712	Green floral bud	0.029
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.378
	SRR8316896	Juvenile bud stage	1.143
	SRR8316897	Juvenile bud stage	0.052
	SRR8316894	Third green stage	0.311
	SRR8316900	Third green stage	0.285
	SRR8316901	Third green stage	0.356
	SRR8316898	Complete white stage	0.006
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.039
	SRR6706287	Light intensity 50%	0.035
	SRR6706288	Light intensity 20%	0.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.957
	CNS0095593	Slightly white alabastrum(diploid) 2	0.879
	CNS0095594	Slightly white alabastrum(diploid) 3	1.070
	CNS0095595	Whole white alabastrum(diploid) 2	0.157
	CNS0095596	Whole white alabastrum(diploid) 3	0.132
	CNS0095597	Whole white alabastrum(diploid) 4	0.358
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.790
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.454
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.027
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.599
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.406
	CNS0095610	Silvery flower (tetraploid) 1	9.214
	CNS0095611	Silvery flower (tetraploid) 2	9.381
	CNS0095612	Silvery flower (tetraploid) 3	10.699
	CNS0095613	Golden flower (tetraploid) 1	5.561
	CNS0095614	Golden flower (tetraploid) 2	6.725
	CNS0095615	Golden flower (tetraploid) 3	7.032
CRA001975	CRR073297	Stem 1	0.287
	CRR073298	Stem 2	0.274
	CRR073299	Stem 3	0.366
	CRR073300	Leaf 1	0.206
	CRR073301	Leaf 2	0.304
	CRR073302	Leaf 3	0.049
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.050
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.109
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.007
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000