Gene detail

Detail information of GWHGAAZE033402

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006420529.1	0	hypothetical protein CICLE_v10004196mg [Citrus clementina]
COG	YP_004775215.1	5E-56	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9LVP0\|Y5639_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At5g63930 (Precursor)
trEMBL	tr\|V4U3H7\|V4U3H7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR33769.1}
TAIR10	AT5G63930.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000093	gene	441992	446258	+
GWHAAZE00000093	mRNA	441992	446258	+
GWHAAZE00000093	exon	441992	444953	+
GWHAAZE00000093	exon	445852	446258	+
GWHAAZE00000093	CDS	441992	444953	+
GWHAAZE00000093	CDS	445852	446258	+

Transcript Sequence
>GWHTAAZE033441 TTAGTGAAGATTCTTACAATGGCCGAAATTTTTGAGTTGAAAAGAAGATTAGTTGTGGGTTGTATGGTGATTTTTGTTGCTTTTTTATTGTTTGGTTCATCAAAGGGGTTGAACTTGGAAGGAATATACCTACTAGAGTTGAAAAAAAGCATTCAAGATGATTTTGGTTTCCTTCAGAATTGGAATCCTAGTGATCAAACACCATGTATGTGGAGGGGCGTGAATTGCACATCAGACTATGATCCAGTGGTGAGGTCTCTTAATTTGAGCTCGATGAATCTTTCGGGTACCTTAAACCCTAGTATAGGCAACTTGATTTTCCTCACATATCTCAACGTTTCCTCTAACGGGTTTTCCGGTTTCATCCCCAAGGAGATTGGAAATTGCTCGAGATTGGATCATCTTTACTTGAATAACAACCAATTTGATGGGCAAATTCCTCCTGAATTAGGCCATTTGCCCTCTTTGAGGTTCTTGAACATATGCAACAATAAGATCTCCGGTTCTATACCGGAAGAATTCGGTCACCTTTCTTCGTTGATCGAATTCGTAGCCTACACGAACAATCTGACTGGCCCGTTGCCCATCTCCATTGGGAATCTCAAGAACTTGAGGCGTTTTCAGGCTGGGGATAACGCCATTTCAGGCAGCATACCTACCCAAATAGGCGGTTGTCAAAGTCTAGAGTATCTTGGTGTTGCCCAAAATGAGCTAACTGGGGATATCCCCAAAGAGCTTGGCTTGCTTCAGCAGTTAACGGATCTAGTCCTTTGGGATAATGGGTTATCGGGTTCTGTGCCGAACGAGATTGGAAACTGCACGAATCTTGAGATGCTCGCTTTGTATCAAAACAACCTCGTTGGCGAAATACCGAAGGAGATTGGAAATCTCAAGTTCTTGAAGTTCTTGTACCTGTACAGAAATGAATTGAATGGAACAATTCCAAGGGAGATTGGGAATCTTTCTATGGCCATCCAAATTGATTTTTCGGAGAACTTTTTGACAGGGGAAATTCTACCTGAGTTTAGTCAAATAAAGGGCTTAACCTTACTCTACTTGTTCCAAAACCAGCTCACCGGTGTCATACCCAACGAGCTTAGTAGCTTGAAGAACTTATCAAAGCTCGATCTCAGTATTAACTTCCTCACAGGCCCTATTCCATTTTGGTTTCAATATTTACCACAAATGGTTCAGTTACAGCTTTTCGCTAACGATTTGAGTGGCAACATTCCTCATAATCTCGGACTTTATAGCAAGCTCTGGGTGGTTGATTTTTCGAAAAACCACCTAACGGGTCGGATTCCTCCTCATATATGTCACCATTCTAACTTGATTTTGCTGAACGTTGAGTCCAATAAACTGCATGGGGATATCCCAAATGGGATTAAGGATTGCCAATCCTTGGTTCAGCTCCGTTTGAATGGGAATAGGCTAACCGGGGACTTCCCATCCGAGTTGTGCAAATTAACAAACCTCTCTGCTGTTGAATTGGGTCAGAACAGTTTCAGTGGTCCAATAGCTAAAGAAATTAACAATTGCCGAAAGTTGCAAAGGCTCATTCTCTCCGGCAATGCCTTCAATTCTTCGTTACCGAAGGAGATAGGAGAACTTTCTCAACTGGTGACTTTTAACGTATCATCTAATTTTATCAACGGTCAGATCCCACCGGAGATTCTCAACTGCAAGGCACTTCAACGGTTGGATCTCAGTCGAAACGGCTTTGTGGGTCCCATACCGAACGAGCTCGGGACCCTTTTGCAGCTAGAGCTTCTCATGCTCTCAGATAACAAGTTATCTGGAAATATACCGTCTGCATTGGGCAATCTCTCTCGTTTGACCGAGCTGCAAATGGGGGGGAACTCTTTTTCTGGCGAGATTCCGCCGGAGTTGGGCGGTCTTACTAGCTTGCAGATAGCAATGAATCTTAGTAACAACAATCTCTCAGGCACCATTCCACCAGAGCTCGGCAAGCTCTTTTTGCTGGAGTACCTCATAGTAAACAACAATCATTTGAGCGGCGAAATCCCAAGCACATTTGGGAGCTTGTCAGGTTTACTCGGCTGCAATTTCTCATATAATGACCTTGACGGACCGTTACCTTCGATACCAGCATTTCAAAACATGACCATTAGTAGCTTTCTTGGAAACAATGGTCTTTGCGGAAAGCCTCTTGGTGGTTGCAACGAAAACTCATCATTTGGTGAAATCCCACCGTTGGAAAAATCATTTACTCAGAGAGGCGAAATCATCATGATTGTATCGGCTTCTATAGGCGGAGTTTCTCTTGTTCTTATAGTAATCATACTATATTTCTTGATCCAGAAACGCCCGGATGAAAATGCGGATTCATATGATGATAATGGGATTTCTTCACCAGATTCTGCTGACATTTACTTCCCTCCGAAAGAAGGGTTCACTCTGAAGGACTTGGTTGAGGCAACGGGCGATTTTCAAGACCGTTTTATTATTGGGAGGGGAGCCGTTGGGACGGTTTACAAGGCTGTTATGCAATCCGGACAAACCGTTGCTATCAAGAAACTCGATTCGAACAGAGAGGGGAACAATATCGACACCAGTTTCAGAGCCGAGATTTTGACTCTCGGGAAAATTAGGCACCGGAACATAGTCAAACTATATGGTTTTTGCTATCACCAGGGCTCGAATCTTCTTCTTTACGAGTACCTCGCAAAGGGGAGCTTGGGAGAGTTGCTTCATGGGGAAGTGTGTGGATTGGAGTGGTCAACACGCTTTTCAATAGCTCTCGGGGCAGCTCAGGGGCTTGCATACTTGCATCATGACTGTAAGCCAAGGATTATTCATCGGGATATAAAGTCGAATAATATATTGATCGACGACGACTTTGAAGCTCATGTTGGTGATTTTGGTTTGGCTAAGGTTATTGATATGCCTCAGTCCAAGTCCATGTCTGCAGTTGCTGGATCATATGGATACATTGCACCTGAATATGCATACACCATGAAGGTAACTGAAAAATGTGACGTCTATAGTTATGGAGTTGTTTTACTAGAACTACTCACCGGAAAAACTCCGGTACAGCCACTAGATCAAGGTGGCGATCTTGTTACATTGGTGAGAAATTACATCAGGGAACATTCACTTTCGTCGGGCATTCTTGACTGTCGACTAAATCTCATGGACGAGAGCATCGTCTACCATATGATCACTGTGTTGAAAGTCGCACTAATGTGCACGAGCATGCCACCAAGCGACCGTCCCTCGATGCGGGAAGTTGTGCTAATGCTGATCGAGTCGAACGAGTGGTGGGAAGGTAACTACGTTCCTTCTCCGCTTTACGATCTCCCTCTCAAAGATGACTTCCTAGTAAAACGAGATGATGGTTCAGTATGA

Network for GWHGAAZE033402

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	41	76	1.90E-09
PF00069.26	Pkinase	822	1084	4.90E-49

Protein Sequence

>GWHPAAZE033423
LVKILTMAEIFELKRRLVVGCMVIFVAFLLFGSSKGLNLEGIYLLELKKSIQDDFGFLQNWNPSDQTPCMWRGVNCTSDYDPVVRSLNLSSMNLSGTLNPSIGNLIFLTYLNVSSNGFSGFIPKEIGNCSRLDHLYLNNNQFDGQIPPELGHLPSLRFLNICNNKISGSIPEEFGHLSSLIEFVAYTNNLTGPLPISIGNLKNLRRFQAGDNAISGSIPTQIGGCQSLEYLGVAQNELTGDIPKELGLLQQLTDLVLWDNGLSGSVPNEIGNCTNLEMLALYQNNLVGEIPKEIGNLKFLKFLYLYRNELNGTIPREIGNLSMAIQIDFSENFLTGEILPEFSQIKGLTLLYLFQNQLTGVIPNELSSLKNLSKLDLSINFLTGPIPFWFQYLPQMVQLQLFANDLSGNIPHNLGLYSKLWVVDFSKNHLTGRIPPHICHHSNLILLNVESNKLHGDIPNGIKDCQSLVQLRLNGNRLTGDFPSELCKLTNLSAVELGQNSFSGPIAKEINNCRKLQRLILSGNAFNSSLPKEIGELSQLVTFNVSSNFINGQIPPEILNCKALQRLDLSRNGFVGPIPNELGTLLQLELLMLSDNKLSGNIPSALGNLSRLTELQMGGNSFSGEIPPELGGLTSLQIAMNLSNNNLSGTIPPELGKLFLLEYLIVNNNHLSGEIPSTFGSLSGLLGCNFSYNDLDGPLPSIPAFQNMTISSFLGNNGLCGKPLGGCNENSSFGEIPPLEKSFTQRGEIIMIVSASIGGVSLVLIVIILYFLIQKRPDENADSYDDNGISSPDSADIYFPPKEGFTLKDLVEATGDFQDRFIIGRGAVGTVYKAVMQSGQTVAIKKLDSNREGNNIDTSFRAEILTLGKIRHRNIVKLYGFCYHQGSNLLLYEYLAKGSLGELLHGEVCGLEWSTRFSIALGAAQGLAYLHHDCKPRIIHRDIKSNNILIDDDFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKTPVQPLDQGGDLVTLVRNYIREHSLSSGILDCRLNLMDESIVYHMITVLKVALMCTSMPPSDRPSMREVVLMLIESNEWWEGNYVPSPLYDLPLKDDFLVKRDDGSV

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.830
	SRR3591706	second leaf	0.280
	SRR3591707	mature leaf	0.053
	SRR3591708	Shoot apex	2.051
	SRR3591709	Stem	15.730
	SRR3591710	White floral bud	1.129
	SRR3591711	White flower	2.298
	SRR3591712	Green floral bud	1.043
	SRR3591713	Yellow flower	1.510
SRP173429	SRR8316895	Juvenile bud stage	1.229
	SRR8316896	Juvenile bud stage	1.108
	SRR8316897	Juvenile bud stage	0.279
	SRR8316894	Third green stage	0.492
	SRR8316900	Third green stage	1.365
	SRR8316901	Third green stage	1.288
	SRR8316898	Complete white stage	0.419
	SRR8316899	Complete white stage	1.227
	SRR8316903	Complete white stage	0.824
	SRR8316902	Silver flowering stage	2.797
	SRR8316904	Silver flowering stage	3.489
	SRR8316905	Silver flowering stage	1.872
	SRR8316906	Gold flowering stage	11.479
	SRR8316907	Gold flowering stage	9.482
	SRR8316908	Gold flowering stage	4.535
SRP132670	SRR6706286	Control	0.944
	SRR6706287	Light intensity 50%	0.820
	SRR6706288	Light intensity 20%	0.917
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.793
	CNS0095593	Slightly white alabastrum(diploid) 2	3.106
	CNS0095594	Slightly white alabastrum(diploid) 3	1.506
	CNS0095595	Whole white alabastrum(diploid) 2	1.463
	CNS0095596	Whole white alabastrum(diploid) 3	1.297
	CNS0095597	Whole white alabastrum(diploid) 4	1.213
	CNS0095598	Silvery flower (diploied) 1	1.770
	CNS0095599	Silvery flower (diploied) 2	1.977
	CNS0095600	Silvery flower (diploied) 3	3.311
	CNS0095601	Golden flower (diploid) 1	1.621
	CNS0095602	Golden flower (diploid) 2	4.788
	CNS0095603	Golden flower (diploid) 3	3.919
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.757
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.995
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.763
	CNS0095610	Silvery flower (tetraploid) 1	2.144
	CNS0095611	Silvery flower (tetraploid) 2	2.333
	CNS0095612	Silvery flower (tetraploid) 3	1.794
	CNS0095613	Golden flower (tetraploid) 1	1.250
	CNS0095614	Golden flower (tetraploid) 2	2.958
	CNS0095615	Golden flower (tetraploid) 3	0.811
CRA001975	CRR073297	Stem 1	2.361
	CRR073298	Stem 2	1.406
	CRR073299	Stem 3	1.832
	CRR073300	Leaf 1	2.366
	CRR073301	Leaf 2	1.826
	CRR073302	Leaf 3	1.903
	CRR073303	Juvenile bud 1	1.813
	CRR073304	Juvenile bud 2	1.397
	CRR073305	Juvenile bud 3	2.358
	CRR073306	Third green 1	0.700
	CRR073307	Third green 2	0.612
	CRR073308	Third green 3	0.758
	CRR073309	Second white 1	4.083
	CRR073310	Second white 2	2.301
	CRR073311	Second white 3	1.224
	CRR073312	Silver flowering 1	0.947
	CRR073313	Silver flowering 2	2.803
	CRR073314	Silver flowering 3	1.754
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.303
	CRR073317	Gold flowering 3	0.077
	CRR073318	Tawny withering 1	13.063
	CRR073319	Tawny withering 2	9.765
	CRR073320	Tawny withering 3	6.255