Detail information of GWHGAAZE033414


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006367017.17.77044E-18PREDICTED: TMV resistance protein N-like, partial [Solanum tuberosum]
trEMBLtr|S4S9Y7|S4S9Y7_FRAVE3E-16NBS protein {ECO:0000313|EMBL:AFK10171.1} (Fragment)
TAIR10AT1G72840.20.0000002Disease resistance protein (TIR-NBS-LRR class)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000093gene699489699845+
GWHAAZE00000093mRNA699489699845+
GWHAAZE00000093exon699489699845+
GWHAAZE00000093CDS699489699845+
Transcript Sequence

Network for GWHGAAZE033414

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0081


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.342
SRR3591706second leaf1.065
SRR3591707mature leaf0.943
SRR3591708Shoot apex1.005
SRR3591709Stem1.406
SRR3591710White floral bud0.408
SRR3591711White flower0.894
SRR3591712Green floral bud0.335
SRR3591713Yellow flower1.459
SRP173429 SRR8316895Juvenile bud stage 2.643
SRR8316896Juvenile bud stage 2.743
SRR8316897Juvenile bud stage 4.213
SRR8316894Third green stage 0.287
SRR8316900Third green stage 1.274
SRR8316901Third green stage 2.144
SRR8316898Complete white stage 0.208
SRR8316899Complete white stage 2.279
SRR8316903Complete white stage 0.375
SRR8316902Silver flowering stage0.613
SRR8316904Silver flowering stage0.643
SRR8316905Silver flowering stage0.318
SRR8316906Gold flowering stage 1.600
SRR8316907Gold flowering stage 0.904
SRR8316908Gold flowering stage 1.456
SRP132670SRR6706286Control0.012
SRR6706287Light intensity 50%0.096
SRR6706288Light intensity 20%0.002
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.376
CNS0095593Slightly white alabastrum(diploid) 21.989
CNS0095594Slightly white alabastrum(diploid) 31.828
CNS0095595Whole white alabastrum(diploid) 22.073
CNS0095596Whole white alabastrum(diploid) 30.814
CNS0095597Whole white alabastrum(diploid) 41.283
CNS0095598Silvery flower (diploied) 16.821
CNS0095599Silvery flower (diploied) 24.867
CNS0095600Silvery flower (diploied) 34.412
CNS0095601Golden flower (diploid) 13.733
CNS0095602Golden flower (diploid) 23.902
CNS0095603Golden flower (diploid) 33.382
CNS0095604Slightly white alabastrum(tetraploid) 10.404
CNS0095605Slightly white alabastrum(tetraploid) 20.457
CNS0095606Slightly white alabastrum(tetraploid) 31.374
CNS0095607Whole white alabastrum(tetraploid) 10.092
CNS0095608Whole white alabastrum(tetraploid) 20.171
CNS0095609Whole white alabastrum(tetraploid) 31.287
CNS0095610Silvery flower (tetraploid) 11.386
CNS0095611Silvery flower (tetraploid) 21.332
CNS0095612Silvery flower (tetraploid) 32.898
CNS0095613Golden flower (tetraploid) 11.473
CNS0095614Golden flower (tetraploid) 21.329
CNS0095615Golden flower (tetraploid) 31.922
CRA001975CRR073297Stem 10.266
CRR073298Stem 20.325
CRR073299Stem 30.121
CRR073300Leaf 10.317
CRR073301Leaf 20.574
CRR073302Leaf 30.017
CRR073303Juvenile bud 10.147
CRR073304Juvenile bud 20.202
CRR073305Juvenile bud 30.061
CRR073306Third green 10.095
CRR073307Third green 20.000
CRR073308Third green 30.062
CRR073309Second white 10.000
CRR073310Second white 20.153
CRR073311Second white 30.637
CRR073312Silver flowering 10.414
CRR073313Silver flowering 20.156
CRR073314Silver flowering 30.065
CRR073315Gold flowering 10.222
CRR073316Gold flowering 20.371
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.614
CRR073319Tawny withering 22.477
CRR073320Tawny withering 30.366