Gene detail

Detail information of GWHGAAZE033451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653033.1	4.88173E-58	PREDICTED: uncharacterized protein LOC100259625 [Vitis vinifera]
Swissprot	tr\|Q8GRL4\|HOX19_ORYSJ	9E-27	Homeobox-leucine zipper protein HOX19
trEMBL	tr\|F6HGI5\|F6HGI5_VITVI	5E-58	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51331.1}
TAIR10	AT3G10572.1	1E-34	3-phosphoinositide-dependent protein kinase-1, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000099	gene	768361	795583	+
GWHAAZE00000099	mRNA	768361	795583	+
GWHAAZE00000099	exon	768361	768416	+
GWHAAZE00000099	exon	769230	769424	+
GWHAAZE00000099	exon	777743	777820	+
GWHAAZE00000099	exon	780723	781002	+
GWHAAZE00000099	exon	784572	784621	+
GWHAAZE00000099	exon	785954	786161	+
GWHAAZE00000099	exon	793004	793083	+
GWHAAZE00000099	exon	795304	795583	+
GWHAAZE00000099	CDS	768361	768416	+
GWHAAZE00000099	CDS	769230	769424	+
GWHAAZE00000099	CDS	777743	777820	+
GWHAAZE00000099	CDS	780723	781002	+
GWHAAZE00000099	CDS	784572	784621	+
GWHAAZE00000099	CDS	785954	786161	+
GWHAAZE00000099	CDS	793004	793083	+
GWHAAZE00000099	CDS	795304	795583	+

Transcript Sequence
>GWHTAAZE033490 ATGGGTATATCCTCCGAAAACCCTACAATTTGGGATGAAATCGAGCTTGCTGAAAGCTACCTTATTTGCTGTATGTTTGGGGAAGCATCATCATCAGCTTCCTCTGTTATTAAGCGTTTACGTGATTATGATGATGAAGGGAAACAACAAACCCTAAACCTAGAGGAGGATATTGTAGAACTGAATGAGATGTTGGAATCAGCTGGTATGGTCTTTGTTCAGTCCTTGAAGGAACTACTACTTGGACCAAGGACGATGGAAATCTTGAAGGAGCTCAAGAGTTTGTTTGGTTCAGTCTCTGCCATTCCTGTTCAAGTTTTTCTAACTGGGGTCTGTTTTCAAATGCAAGAAGATCCTACTGGTGCTCTGGAATTTCTCAAGGAATACCTTGGCAAGTGGCGATGCGTGGATGAACGATATTACATTCTTGCTAGTGCCAAAGAAAATTTGGCTTATAAAGAAGGATGTGACCATCGGTCTGTGGTAGGAGTTGATAAGTACCTTGAAGTTGTGGAGGCGTATCTGACACTTCTCGCAACTGTTAGGAGTGACATGGGCCATGCCGTATCTTGGATTGAAAAGGCAGAATTACCCGAGGGTAAGCGACAGAGTCCCTCGCTTCTGGTGGTTCCGTACATTCACTTTGAAGATTGGAAAAGGATTTTGATGAGACATGCCCAATACATGAAGAAAGCGGTGGTTGACATGTGGCAACTTGCATTCTCATACCAAGTTAACCCTCTAGCTGCTGTTCAACCCATCCCTTCAACAACACCGGAGGAAGCCGCCATTGATGACCGTACTTTCTCTCACGCTTATCCGCCTACCCATTTGTGTGTTCATTTTGACCAAAAAGAAAATATTTCTGGTCAGAAGCAGGCACTTGCTCAGAAATTAAATTTACAGCCACGCCAAGTGGAAGTCTGGTTTCAAAATAGACGAGCAAGGACAAAGTTGAAGCAAACAGAGGTTGAATGGGAGTTATTGAAAAAGTGGTGCCAAGAGCTAACCGAAGAAAACAGGAGATTAAAGAAAGAGCTGCAAGAATTAACAACAACATCAGAATTAAAGCAACTAAAATCCCCACTATCTCTACCCCTACCTCTATATATTCAACTTTCAAGAAATAATAATGCTGCTGCTGCTACTCCTACTACCCTAACAGTGTGTGCTACTTGCCAGAATTTCGTCAAAGCTGAATCTACTCATGGATGTGGTCCTTCCTAA

Network for GWHGAAZE033451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	282	318	1.50E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.557
	SRR3591706	second leaf	2.869
	SRR3591707	mature leaf	2.748
	SRR3591708	Shoot apex	4.087
	SRR3591709	Stem	4.358
	SRR3591710	White floral bud	3.210
	SRR3591711	White flower	4.847
	SRR3591712	Green floral bud	4.320
	SRR3591713	Yellow flower	3.503
SRP173429	SRR8316895	Juvenile bud stage	2.036
	SRR8316896	Juvenile bud stage	3.361
	SRR8316897	Juvenile bud stage	1.660
	SRR8316894	Third green stage	1.420
	SRR8316900	Third green stage	3.823
	SRR8316901	Third green stage	2.880
	SRR8316898	Complete white stage	0.750
	SRR8316899	Complete white stage	3.192
	SRR8316903	Complete white stage	1.590
	SRR8316902	Silver flowering stage	1.323
	SRR8316904	Silver flowering stage	1.227
	SRR8316905	Silver flowering stage	0.698
	SRR8316906	Gold flowering stage	2.124
	SRR8316907	Gold flowering stage	0.778
	SRR8316908	Gold flowering stage	1.952
SRP132670	SRR6706286	Control	2.036
	SRR6706287	Light intensity 50%	2.394
	SRR6706288	Light intensity 20%	2.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.925
	CNS0095593	Slightly white alabastrum(diploid) 2	2.903
	CNS0095594	Slightly white alabastrum(diploid) 3	3.173
	CNS0095595	Whole white alabastrum(diploid) 2	3.750
	CNS0095596	Whole white alabastrum(diploid) 3	5.170
	CNS0095597	Whole white alabastrum(diploid) 4	5.235
	CNS0095598	Silvery flower (diploied) 1	2.311
	CNS0095599	Silvery flower (diploied) 2	2.589
	CNS0095600	Silvery flower (diploied) 3	2.368
	CNS0095601	Golden flower (diploid) 1	4.137
	CNS0095602	Golden flower (diploid) 2	3.574
	CNS0095603	Golden flower (diploid) 3	2.835
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.079
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.529
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.438
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.892
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.398
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.861
	CNS0095610	Silvery flower (tetraploid) 1	1.417
	CNS0095611	Silvery flower (tetraploid) 2	2.599
	CNS0095612	Silvery flower (tetraploid) 3	2.582
	CNS0095613	Golden flower (tetraploid) 1	1.635
	CNS0095614	Golden flower (tetraploid) 2	1.649
	CNS0095615	Golden flower (tetraploid) 3	2.563
CRA001975	CRR073297	Stem 1	3.306
	CRR073298	Stem 2	3.874
	CRR073299	Stem 3	2.434
	CRR073300	Leaf 1	3.162
	CRR073301	Leaf 2	2.150
	CRR073302	Leaf 3	3.284
	CRR073303	Juvenile bud 1	2.409
	CRR073304	Juvenile bud 2	1.806
	CRR073305	Juvenile bud 3	2.869
	CRR073306	Third green 1	0.848
	CRR073307	Third green 2	1.327
	CRR073308	Third green 3	2.898
	CRR073309	Second white 1	1.291
	CRR073310	Second white 2	1.279
	CRR073311	Second white 3	1.348
	CRR073312	Silver flowering 1	1.571
	CRR073313	Silver flowering 2	1.297
	CRR073314	Silver flowering 3	1.387
	CRR073315	Gold flowering 1	2.203
	CRR073316	Gold flowering 2	2.270
	CRR073317	Gold flowering 3	2.193
	CRR073318	Tawny withering 1	2.671
	CRR073319	Tawny withering 2	1.804
	CRR073320	Tawny withering 3	3.183