Gene detail

Detail information of GWHGAAZE033454

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN77549.1	8.81462E-47	hypothetical protein VITISV_017244 [Vitis vinifera]
Swissprot	tr\|Q9LFE0\|DOT2_ARATH	2E-35	SART-1 family protein DOT2 {ECO:0000305}
trEMBL	tr\|A5C3T4\|A5C3T4_VITVI	3E-47	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN77549.1}
TAIR10	AT5G16780.1	2E-27	SART-1 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000100	gene	27067	28755	+
GWHAAZE00000100	mRNA	27067	28755	+
GWHAAZE00000100	exon	27067	27148	+
GWHAAZE00000100	exon	27252	27339	+
GWHAAZE00000100	exon	27431	27516	+
GWHAAZE00000100	exon	27575	27630	+
GWHAAZE00000100	exon	27941	28124	+
GWHAAZE00000100	exon	28529	28755	+
GWHAAZE00000100	CDS	27067	27148	+
GWHAAZE00000100	CDS	27252	27339	+
GWHAAZE00000100	CDS	27431	27516	+
GWHAAZE00000100	CDS	27575	27630	+
GWHAAZE00000100	CDS	27941	28124	+
GWHAAZE00000100	CDS	28529	28755	+

Transcript Sequence
>GWHTAAZE033493 CTTGACAAAGTAATTGAAGGTGGGGCTGTTGTTTTGACGCTCAAGGATCAGGGCATACTTGTCAATGGTGACATGAATGAAGATGTTGATATGCCTGAAAATGTGGAATTGGCAAGCAAAAACAGAGCAGCGAGGCTTATAAGGCTGCGAAAAAGAAAACGGGGATTTATGTTTAATGATGAGCCTGGTCCTGAGAAGAAAATTCTTCCATCGTATGATAATCTGGTTGCGGATGAGGTTAAGCCCTTATCTTTGTTTACTCTGGATGCAAATGGACGATTCACTGGAGAAGCAGAGAAGAAATTGGAGGCGGATAGGGTGTTAACCAGCAATCAAGTTGAAGATCTTGTTTCAATGGGGAAGACCTCATTAGACTATTATACTCACAAAGAAATGCTTCCGTTTAAAAGCCTAAGAAAAGAATTCTTTGAAAAGAAAGATAAGCTGGATTTGAAAGCCCTTGAGGCAGAAGCCATCTCTGCAGGACTGGGTGTTGAAGCTCATAAGCCTGATGATGAAGATGTTTTTATGGAGGAAGATGTCGTACCAGAAATTTCTGGTCAAGATCGCAAAGACGATGTTGGCTGCACTGAGGTGAAAGAGACTACTGAAGAAGAAGCCTCCATTAATCAGCATAAAGAGGAGATAGTCCCAGATGAAACATTTCACGAAGTTGCTGTTGGAAAGGGATTATCAGGCGCACTAAGGCTTCTTAAAGACTGA

Network for GWHGAAZE033454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0094

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03343.14	SART-1	2	166	7.50E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11984	SART1, HAF, SNU66	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000398	biological_process	mRNA splicing, via spliceosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.086
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.655
	SRR8316896	Juvenile bud stage	1.398
	SRR8316897	Juvenile bud stage	0.416
	SRR8316894	Third green stage	0.162
	SRR8316900	Third green stage	0.368
	SRR8316901	Third green stage	0.600
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.032
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.130
	SRR6706287	Light intensity 50%	0.138
	SRR6706288	Light intensity 20%	0.314
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.471
	CNS0095593	Slightly white alabastrum(diploid) 2	0.206
	CNS0095594	Slightly white alabastrum(diploid) 3	2.486
	CNS0095595	Whole white alabastrum(diploid) 2	1.758
	CNS0095596	Whole white alabastrum(diploid) 3	1.633
	CNS0095597	Whole white alabastrum(diploid) 4	2.210
	CNS0095598	Silvery flower (diploied) 1	0.309
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.064
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.799
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.505
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.406
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.033
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.118
	CRR073298	Stem 2	0.427
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.226
	CRR073301	Leaf 2	0.166
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.022
	CRR073308	Third green 3	0.202
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.131
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.067
	CRR073316	Gold flowering 2	0.108
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.001
	CRR073320	Tawny withering 3	0.000