Gene detail

Detail information of GWHGAAZE033478

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004287176.1	0	PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]
COG	YP_003391696.1	3E-27	glycoside hydrolase family 28
Swissprot	tr\|P48979\|PGLR_PRUPE	0	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	6E-136	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	642174	644175	-
GWHAAZE00000104	mRNA	642174	644175	-
GWHAAZE00000104	exon	643804	644175	-
GWHAAZE00000104	exon	642981	643270	-
GWHAAZE00000104	exon	642564	642792	-
GWHAAZE00000104	exon	642174	642392	-
GWHAAZE00000104	CDS	643804	644175	-
GWHAAZE00000104	CDS	642981	643270	-
GWHAAZE00000104	CDS	642564	642792	-
GWHAAZE00000104	CDS	642174	642392	-

Transcript Sequence
>GWHTAAZE033517 TCAATTACTTACAATGTGGCGAGTTTAGGAGCCAAAGCCGACGGAAAGTCGGACTCGAGCAAGGCCTTCCTAAGTGCATGGGCTGCAGCTTGCGCCTCAGCTAATCCGGCCACCATCTACGTGCCAAATGGAATGTTCTTGCTCGGTAGCATTACATTTGCCGGTCAAACGTGCAAAAATACTCGTATTACATTCCGCATTGATGGGACTCTAGTTGCCCCTTCGAATTACAATGTTATTGGAAACTCTGGTAACTGGATCACGTTTCAAAGAGTCACCGGAGTTTCCGTTCTTGGTGGAATCCTAGACGGTCAAGGGACTGACCTTTGGTCTTGTAAAAACTCCGGCAAGAATTGCCCTAATGGAGCAACGTCACTAGGATTCTACAATTCGAACAACATTGTTGTCGATGGACTAACTTCCTTAAACAGTCAAATGTTTCACATTATCATCTACGCTTGCCACAATGCCAAGCTACAAGGAACTAAGATCATGGCAGCCGGTAACAGCCCAAACACCGACGGGATTCACGTACAATTATCCACCGGTGTCACCATCTTGAACTCTCGCATTTCTACTGGTGACGATTGCATCTCAATCGGCCCCGGGAACTCTAATTTGTGGATTGAGAACGTTGCTTGTGGCCCAGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACATACAAGAACCAGGCGTACAAAATGTGACCGTTAAAACCGCTACCTTTAAGGGTACACAAAACGGAGTGAGGATAAAGTCTTGGGCTAGGGCTAGCAATGGCTTCGTTAAGAGTGTTCTTTTCCAACACCTTGTGATGGTCAATGTCCAGAATCCCGTCATAATCGATCAGAATTACTGCCCCGATAATAAAAACTGCCCCGGCCAGGCTTCAGGTGTAAAAATTAGCGACGTAATGTATCAAGACATTCACGGAACATCGGCAACCACGGTGGCTGTGAATTTTGATTGTAGCAAGAAGTATCCATGCAGTAACATAAAATTGGTGGATGTGAACCTTAGCTATAAGGATCAAACCGCACAATCATCTTGCTCTAATGTTGGAGGAACTTCTTCTGGTGTTGTTAATCCTTCTGGCTGCTTGTAA

Network for GWHGAAZE033478

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	31	356	2.40E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.190
	SRR3591710	White floral bud	44.876
	SRR3591711	White flower	0.322
	SRR3591712	Green floral bud	0.831
	SRR3591713	Yellow flower	28.088
SRP173429	SRR8316895	Juvenile bud stage	0.218
	SRR8316896	Juvenile bud stage	1.537
	SRR8316897	Juvenile bud stage	0.775
	SRR8316894	Third green stage	4.626
	SRR8316900	Third green stage	1.655
	SRR8316901	Third green stage	3.887
	SRR8316898	Complete white stage	0.055
	SRR8316899	Complete white stage	0.067
	SRR8316903	Complete white stage	0.204
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.124
	SRR8316905	Silver flowering stage	0.097
	SRR8316906	Gold flowering stage	0.506
	SRR8316907	Gold flowering stage	0.228
	SRR8316908	Gold flowering stage	0.451
SRP132670	SRR6706286	Control	11.301
	SRR6706287	Light intensity 50%	10.566
	SRR6706288	Light intensity 20%	2.813
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.864
	CNS0095593	Slightly white alabastrum(diploid) 2	1.326
	CNS0095594	Slightly white alabastrum(diploid) 3	5.179
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.202
	CNS0095600	Silvery flower (diploied) 3	0.619
	CNS0095601	Golden flower (diploid) 1	0.334
	CNS0095602	Golden flower (diploid) 2	4.398
	CNS0095603	Golden flower (diploid) 3	4.203
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.511
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.228
	CNS0095610	Silvery flower (tetraploid) 1	0.930
	CNS0095611	Silvery flower (tetraploid) 2	0.558
	CNS0095612	Silvery flower (tetraploid) 3	0.205
	CNS0095613	Golden flower (tetraploid) 1	2.136
	CNS0095614	Golden flower (tetraploid) 2	3.203
	CNS0095615	Golden flower (tetraploid) 3	118.155
CRA001975	CRR073297	Stem 1	3.070
	CRR073298	Stem 2	23.587
	CRR073299	Stem 3	8.331
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.602
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.153
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.113
	CRR073307	Third green 2	0.129
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.346
	CRR073310	Second white 2	0.048
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	3.382
	CRR073313	Silver flowering 2	5.570
	CRR073314	Silver flowering 3	11.550
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000