Gene detail

Detail information of GWHGAAZE033479

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHC69830.1	0	abscission polygalacturonase [Nicotiana tabacum]
COG	YP_003391696.1	2E-23	glycoside hydrolase family 28
Swissprot	tr\|P48979\|PGLR_PRUPE	1E-168	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	1E-113	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	737993	739931	-
GWHAAZE00000104	mRNA	737993	739931	-
GWHAAZE00000104	exon	739560	739931	-
GWHAAZE00000104	exon	738806	739095	-
GWHAAZE00000104	exon	738452	738611	-
GWHAAZE00000104	exon	737993	738211	-
GWHAAZE00000104	CDS	739560	739931	-
GWHAAZE00000104	CDS	738806	739095	-
GWHAAZE00000104	CDS	738452	738611	-
GWHAAZE00000104	CDS	737993	738211	-

Transcript Sequence
>GWHTAAZE033518 TCAATTACTTACAATGTTGCGAGTTTAGGAGCCAAAGCCGACGGAAAGTCGGACTCGAGCAAGGCCTTCCTAAGTGCATGGGCTGCAGCTTGCGCCTCGGCTAATCCGGCCACCATCTACGTGCCAAATGGAAGGTTCTTGCTCGGTAGCATTACATTTTCCGGACAAACGTGCAAAAATACTCGTATTACATTCCGCATTGATGGGACTCTAGTTGCCCCTTCGAATTACAATGTTATTGGAAACTCCGGTAACTGGATTACGTTCCAAAGAGTAACCGGAGTTTCCGTTCTTGGGGGAACCCTAGACGGTCAAGGGACTGACCTTTGGTCTTGTAAAAACTCCGGCAAGAATTGCCCTAATGGAGCAGGGTCACTAGGATTCTACAATTCGAACAACATTGTTATCGATGGGCTAACTTCGTTAAACAGTCAAAAGTTTCACATTATCATCTACGCTTGCCGCAACGCCAAGCTACAAGGAACGAAGATCATGGCAGCCGGTAATAGCCCAAACACCGACGGGATTCACGTACAATTATCCACCGGTGTCACCATCTTGAACTCTCGCATTTCTACTGGTGACGATTGCATCTCAATCGGCCCCGGAAACTCTAATTTGTGGATTGAGAACGTTTCTTGTGGGCCAGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACTTACAAGAACCTGGCGTACAAAATGTGACCGTTAAAACCGTTACCTTTAAGGGTACACAAAACGGAGTGAGGATAAAGACCTGGGCTAGAGCTAGTAATGGCTTCGTTAAGAGTGTTCTTTTCCAACACCTTGTGATGGTTTCGGGTGTAAAAATTAGCGACGTAATGTATCAAGACATTCACGGAACATCGGCAACCGCGGTGGCCATGAATTTTGATTGTAGCAAGAAGTATCCATGCAGTAACATAAAATTGGTGGATGTGAACCTCAGCTATAGGGATCAAACAGCACAAGCATCTTGCTCTAATGTTGGAGGAACTTCTTCTGGTGTTGTTAAGCCTTCTAGCTGCTTGTAA

Network for GWHGAAZE033479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	31	274	6.40E-60
PF00295.18	Glyco_hydro_28	275	333	2.60E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.118
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	39.848
	SRR3591711	White flower	0.070
	SRR3591712	Green floral bud	0.360
	SRR3591713	Yellow flower	10.349
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.145
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.718
	SRR8316900	Third green stage	0.229
	SRR8316901	Third green stage	0.345
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.072
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.227
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.170
SRP132670	SRR6706286	Control	2.446
	SRR6706287	Light intensity 50%	2.435
	SRR6706288	Light intensity 20%	0.338
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.287
	CNS0095593	Slightly white alabastrum(diploid) 2	0.151
	CNS0095594	Slightly white alabastrum(diploid) 3	0.226
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.110
	CNS0095599	Silvery flower (diploied) 2	0.323
	CNS0095600	Silvery flower (diploied) 3	0.020
	CNS0095601	Golden flower (diploid) 1	0.018
	CNS0095602	Golden flower (diploid) 2	2.325
	CNS0095603	Golden flower (diploid) 3	1.901
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.055
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.626
	CNS0095610	Silvery flower (tetraploid) 1	0.045
	CNS0095611	Silvery flower (tetraploid) 2	0.049
	CNS0095612	Silvery flower (tetraploid) 3	0.455
	CNS0095613	Golden flower (tetraploid) 1	1.062
	CNS0095614	Golden flower (tetraploid) 2	1.464
	CNS0095615	Golden flower (tetraploid) 3	8.627
CRA001975	CRR073297	Stem 1	0.058
	CRR073298	Stem 2	1.809
	CRR073299	Stem 3	0.274
	CRR073300	Leaf 1	0.065
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.043
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.178
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.224
	CRR073311	Second white 3	0.154
	CRR073312	Silver flowering 1	9.538
	CRR073313	Silver flowering 2	7.974
	CRR073314	Silver flowering 3	8.380
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000