Gene detail

Detail information of GWHGAAZE033480

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004287176.1	0	PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]
COG	YP_003391696.1	6E-29	glycoside hydrolase family 28
Swissprot	tr\|P48979\|PGLR_PRUPE	0	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	6E-135	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	811566	813660	-
GWHAAZE00000104	mRNA	811566	813660	-
GWHAAZE00000104	exon	811566	811784	-
GWHAAZE00000104	exon	811956	812184	-
GWHAAZE00000104	exon	812373	812662	-
GWHAAZE00000104	exon	813214	813660	-
GWHAAZE00000104	CDS	813214	813660	-
GWHAAZE00000104	CDS	812373	812662	-
GWHAAZE00000104	CDS	811956	812184	-
GWHAAZE00000104	CDS	811566	811784	-

Transcript Sequence
>GWHTAAZE033519 ATGGTGAAACAAAACAGCTTCATTTTTCTTCTTCCACTTCTTTTTATATTCTTCTTCAAAAGTTCATTAGCAGCTTCAATTACTTACAATGTGGCCAGTTTAGGAGCCAAAGCTGACGGAAAGTCGGACTCAAGCAAGGCCTTCCTAAGTGCATGGGCTGCAGCTTGCGCCTCGGCTAATCCGGCCACCATCTACGTGCCAAATGGAAGGTTCTTGCTCGGTAGCATTACATTTGCCGGTCAAACGTGCAAAAATACTCGTATTACATTCCGCATTGATGGGACCCTAGTTGCCCCTTCGAATTATAATGTTATTGGAAACTCTGGTAACTGGATCATGTTCCAAAGAGTAACCGGAGTTTCCGTTCTTGGTGGAACCTTTGACGGTCAAGGGACTGACCTTTGGTCGTGTAAAAACTCAGGCAAGAATTGCCCTAATGGAGCAGCGTCACTAGGATTCTACAATTCGAACAATATTGTTGTCGATGGGCTTACTTCGTTAAATAGTCAAAAGTTTCACATTATCATCTACGCTTGCCGCAACGCCAAGCTACAAGGAACGAAGATCATGGCAGCTGGTAACAGCCCAAACACTGACGGGATTCACGTACAATTATCCACCGGTGTCACCATCTTGAACTCTCGCATTTCTACTGGTGACGATTGCATCTCAATCGGCCCCGGGAACTCTAATTTGTGGATTGAGAACGTTGCTTGTGGGCCAGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACTTACAAGAACCTGGCGTACAAAATGTGACTGTTAAAACTGTTACTTTTAAGGGTACACAAAACGGAGTAAGGATAAAGTCCTGGGCTAGGGCTAGCAATGGCTTTGTTAAGAGTGTTCTTTTCCAACACCTTGTGATGGTCAATGTCCAGAATCCCGTCATAATCGATCAGAATTACTGCCCCGATAATAAAAACTGCCCTGGCCAGGTTTCAGGTGTAAAAATTAGCGACGTAATGTATCAAGACATTCGCGGAACATCGGCAACAGCAGTGGCTGTGAATTTTGATTGTAGCAAAAAGTATCCATGCAGTAACATAAAATTGGTGGATGTGAACCTCAGCTATAAGGATCAAACAGCACAAGCATCTTGCTCTAATGTTGGAGGAACTTCTTCTGGTGTTGTTAAGCCTTCTAGCTGCTTGTAA

Network for GWHGAAZE033480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	56	381	3.40E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	44.525
	SRR3591711	White flower	0.680
	SRR3591712	Green floral bud	3.820
	SRR3591713	Yellow flower	49.641
SRP173429	SRR8316895	Juvenile bud stage	0.477
	SRR8316896	Juvenile bud stage	7.677
	SRR8316897	Juvenile bud stage	0.538
	SRR8316894	Third green stage	6.529
	SRR8316900	Third green stage	1.363
	SRR8316901	Third green stage	1.987
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	0.109
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.087
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.174
	SRR8316907	Gold flowering stage	0.313
	SRR8316908	Gold flowering stage	1.719
SRP132670	SRR6706286	Control	4.317
	SRR6706287	Light intensity 50%	4.151
	SRR6706288	Light intensity 20%	1.189
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.045
	CNS0095593	Slightly white alabastrum(diploid) 2	1.480
	CNS0095594	Slightly white alabastrum(diploid) 3	7.647
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.050
	CNS0095599	Silvery flower (diploied) 2	0.146
	CNS0095600	Silvery flower (diploied) 3	0.059
	CNS0095601	Golden flower (diploid) 1	0.066
	CNS0095602	Golden flower (diploid) 2	5.919
	CNS0095603	Golden flower (diploid) 3	5.645
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.665
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.474
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.076
	CNS0095610	Silvery flower (tetraploid) 1	0.335
	CNS0095611	Silvery flower (tetraploid) 2	0.249
	CNS0095612	Silvery flower (tetraploid) 3	0.029
	CNS0095613	Golden flower (tetraploid) 1	10.617
	CNS0095614	Golden flower (tetraploid) 2	8.505
	CNS0095615	Golden flower (tetraploid) 3	61.958
CRA001975	CRR073297	Stem 1	5.133
	CRR073298	Stem 2	37.506
	CRR073299	Stem 3	13.269
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.185
	CRR073302	Leaf 3	0.223
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.252
	CRR073307	Third green 2	0.310
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.037
	CRR073310	Second white 2	0.076
	CRR073311	Second white 3	0.290
	CRR073312	Silver flowering 1	7.857
	CRR073313	Silver flowering 2	12.302
	CRR073314	Silver flowering 3	21.154
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000