Gene detail

Detail information of GWHGAAZE033485

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001064885.1	2.2854E-89	Os10g0483400 [Oryza sativa Japonica Group]
COG	YP_004180201.1	0.0000002	serine/threonine protein kinase
Swissprot	tr\|Q9ASQ6\|Y1972_ARATH	3E-49	Probable LRR receptor-like serine/threonine-protein kinase At1g29720 (Precursor)
trEMBL	tr\|A0A067JIV9\|A0A067JIV9_JATCU	5E-99	Uncharacterized protein {ECO:0000313\|EMBL:KDP23802.1}
TAIR10	AT1G29720.1	4E-45	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	988071	993838	+
GWHAAZE00000104	mRNA	988071	993838	+
GWHAAZE00000104	exon	988071	988086	+
GWHAAZE00000104	exon	989590	989719	+
GWHAAZE00000104	exon	991407	991533	+
GWHAAZE00000104	exon	992184	992394	+
GWHAAZE00000104	exon	992731	992770	+
GWHAAZE00000104	exon	992862	993012	+
GWHAAZE00000104	exon	993521	993838	+
GWHAAZE00000104	CDS	988071	988086	+
GWHAAZE00000104	CDS	989590	989719	+
GWHAAZE00000104	CDS	991407	991533	+
GWHAAZE00000104	CDS	992184	992394	+
GWHAAZE00000104	CDS	992731	992770	+
GWHAAZE00000104	CDS	992862	993012	+
GWHAAZE00000104	CDS	993521	993838	+

Transcript Sequence
>GWHTAAZE033524 ATGACTAGTTTTTCAAGAGGTTCATCAAACAAGAAGAAAGCCATAATTGGGGGTGTGGGTGGAGGTGGGGGGTTTCTTTTGCTCATACTTGCTTTCTTTTTGTGGTATACTCAATCAAAGAAGCCCAATTATGCTAGAAGAGGTATGAAATACATTGGGGCAACAGAGCTACGAGGCGCACATAATTATAGTTACCGAGATTTGAAATCAGCTACCAAAAATTTTAGTCAAGAATACAAATTAGGAGAAGGTGGCTTTGGAGAAGTGTTCAAGGGAATACTAAAGAATGGGAATGTAGTGGCAGTGAAGAGAATAACAATGTCCTCAAGCAGAGCAAATACAGAATTTGAAAGTGAAGTTAGGCTAATAAGCAATGTTCATCATCGAAATCTCATCCGTCTATTAGGATGTTGCAGCAAATCTTCAAAGCTTTTTCTTGTCCTAGAATACATGGCCAATGGTAGCCTTGATAAACTTTTGTTCGGGGATCAGAGCCACGTCAGCAGCAAATTTGCAGGGACTTTGGGTTATACTGCACCAGAATATGCAATTCATGGACGCTTGTCCGAAAAAGTTGATACATACAGTTTTGGTGTTGTGGTGCTTGAGATTATAAGTGGAAGAAGGTGCACTGAGATCCAAGATGATCCTCCATCTGATTACCTCCTTGAAAATGCATGGAAACTGTATGAGAATGACATGCATTTGAAGCTGGTAGATGAGACACTGGACCCAAATGAATATACACCAGAAGAGGCAAAGAAGATCATTGAAATTGCTCTAATGTGCACTCAATCACCTGTTTCTTTGAGGCCAAATATGTCTGATGTTGTTGCTTCTCTTTCTAGTGACCGGTTCCTTGACGGAAAACCGACCAACCGCTATTCTTTGGTTGACTCTGAACACAAGGTTTTAGGGAATACTATGTCGACATCTTCTACTTCGACTAATACTAATGCCGCTGCTTCTTTTAGTGAGTCTGCTGGTCGTTAG

Network for GWHGAAZE033485

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	78	163	3.30E-18
PF07714.18	PK_Tyr_Ser-Thr	169	281	9.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.437
	SRR3591706	second leaf	8.344
	SRR3591707	mature leaf	31.478
	SRR3591708	Shoot apex	2.192
	SRR3591709	Stem	5.124
	SRR3591710	White floral bud	1.539
	SRR3591711	White flower	1.482
	SRR3591712	Green floral bud	1.582
	SRR3591713	Yellow flower	2.539
SRP173429	SRR8316895	Juvenile bud stage	0.290
	SRR8316896	Juvenile bud stage	0.758
	SRR8316897	Juvenile bud stage	0.245
	SRR8316894	Third green stage	0.228
	SRR8316900	Third green stage	0.538
	SRR8316901	Third green stage	0.689
	SRR8316898	Complete white stage	0.123
	SRR8316899	Complete white stage	0.118
	SRR8316903	Complete white stage	0.088
	SRR8316902	Silver flowering stage	0.160
	SRR8316904	Silver flowering stage	0.237
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.423
	SRR8316907	Gold flowering stage	0.295
	SRR8316908	Gold flowering stage	1.081
SRP132670	SRR6706286	Control	0.360
	SRR6706287	Light intensity 50%	0.159
	SRR6706288	Light intensity 20%	0.309
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.319
	CNS0095593	Slightly white alabastrum(diploid) 2	0.449
	CNS0095594	Slightly white alabastrum(diploid) 3	0.863
	CNS0095595	Whole white alabastrum(diploid) 2	1.134
	CNS0095596	Whole white alabastrum(diploid) 3	1.420
	CNS0095597	Whole white alabastrum(diploid) 4	1.347
	CNS0095598	Silvery flower (diploied) 1	0.186
	CNS0095599	Silvery flower (diploied) 2	0.333
	CNS0095600	Silvery flower (diploied) 3	0.123
	CNS0095601	Golden flower (diploid) 1	0.111
	CNS0095602	Golden flower (diploid) 2	0.226
	CNS0095603	Golden flower (diploid) 3	0.187
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.425
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.748
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.622
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.803
	CNS0095610	Silvery flower (tetraploid) 1	0.464
	CNS0095611	Silvery flower (tetraploid) 2	0.145
	CNS0095612	Silvery flower (tetraploid) 3	0.139
	CNS0095613	Golden flower (tetraploid) 1	0.053
	CNS0095614	Golden flower (tetraploid) 2	0.066
	CNS0095615	Golden flower (tetraploid) 3	0.031
CRA001975	CRR073297	Stem 1	0.151
	CRR073298	Stem 2	0.275
	CRR073299	Stem 3	0.085
	CRR073300	Leaf 1	0.210
	CRR073301	Leaf 2	0.233
	CRR073302	Leaf 3	0.062
	CRR073303	Juvenile bud 1	0.207
	CRR073304	Juvenile bud 2	0.105
	CRR073305	Juvenile bud 3	0.123
	CRR073306	Third green 1	0.043
	CRR073307	Third green 2	0.099
	CRR073308	Third green 3	0.099
	CRR073309	Second white 1	0.028
	CRR073310	Second white 2	0.051
	CRR073311	Second white 3	0.032
	CRR073312	Silver flowering 1	0.011
	CRR073313	Silver flowering 2	0.183
	CRR073314	Silver flowering 3	0.588
	CRR073315	Gold flowering 1	1.010
	CRR073316	Gold flowering 2	2.911
	CRR073317	Gold flowering 3	0.197
	CRR073318	Tawny withering 1	0.046
	CRR073319	Tawny withering 2	0.686
	CRR073320	Tawny withering 3	0.209