Gene detail

Detail information of GWHGAAZE033488

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010091811.1	8.7588E-118	Cysteine-rich receptor-like protein kinase 3 [Morus notabilis]
COG	YP_004180201.1	0.0000002	serine/threonine protein kinase
Swissprot	tr\|Q9CAL2\|CRK3_ARATH	2E-40	Cysteine-rich receptor-like protein kinase 3 (Precursor)
trEMBL	tr\|W9QZL7\|W9QZL7_9ROSA	3E-118	Cysteine-rich receptor-like protein kinase 3 {ECO:0000313\|EMBL:EXB46019.1}
TAIR10	AT1G70530.1	4E-34	cysteine-rich RLK (RECEPTOR-like protein kinase) 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1032192	1036888	+
GWHAAZE00000104	mRNA	1032192	1036888	+
GWHAAZE00000104	exon	1032192	1032217	+
GWHAAZE00000104	exon	1032299	1032699	+
GWHAAZE00000104	exon	1032861	1032986	+
GWHAAZE00000104	exon	1034182	1034309	+
GWHAAZE00000104	exon	1035187	1035397	+
GWHAAZE00000104	exon	1035588	1035673	+
GWHAAZE00000104	exon	1036580	1036888	+
GWHAAZE00000104	CDS	1032192	1032217	+
GWHAAZE00000104	CDS	1032299	1032699	+
GWHAAZE00000104	CDS	1032861	1032986	+
GWHAAZE00000104	CDS	1034182	1034309	+
GWHAAZE00000104	CDS	1035187	1035397	+
GWHAAZE00000104	CDS	1035588	1035673	+
GWHAAZE00000104	CDS	1036580	1036888	+

Transcript Sequence
>GWHTAAZE033527 ATGTTTGACAATAGTAGCCTAATCGGGTACGAGAGTAATGGATTCTTCGATCAAACAACCGTCCAAGGCAATGGGGGATATTGCGGAGATAGAAATATTTCTTCTCAGGGGACAGCATTTTCTACCGCGGTACTAGGGTTGTTAACAGACCTCGTTGTTGCAACTCCTAGGATTAACAATTATTTTGCTGCGACTAATAGGGCGGCGGTTGGCTCCAATTTAACGGTGCACGCGTTGGCGCAGTGCACCCATACAGTGACTAGTAGTGGGTGCTTAGATTGCTTGAGAGTGGCACGTCAAAATATTGAGAATTGCCCTCCTCTGGCTGATGCAAGGGCCGTTGATGTTGGTTGTTTCATGAGGTATTCATCAACCTCTTTTTTTCCCGCCAACCAATCAACTAATATCGCTCCTTTCTTGCGTGGAGGAGGTTTATCAAACAAGAAGAAAGCCATAATTGGGGGTGTGGTTGGTGGTGGGGGGTTTCTTTTGCTCATACTTGCTTTCTTTTTGTGGTATACTCTATCAAGGAAGCCCGATGATACCAGAAGAGGAAATATATTGGGGGCAACAGAGCTACAAAGGCCAAATAATTATAGTTACAGAGATTTGAAATCAGCTACAAAAAACTTTTGTAAAGAATACAAATTAGGAGAAGGTGGCTTTGGAGATGTGTTCAAGGCAATACTAAAGAATGGGAATATAGTGGCAGTGAAGAGAATAGCAATGTCCTCAAGCACAGCAAATTCAGAATTTGAAAGCGAAGTTAGGCTAATAAGCAATGTTCATCATCGAAATCTCATCCGTCTATTAGGTTGTTGCAGCAAATCTTCAGAGCTTCTTCTTGTCCTAGAATACATGGCCAATGGTAGCCTAGATAAATTTTTGTATGTCCATGACGGAAACATAATGCAGGTGAAAAAAAGGGGACTCTTAACTGGAAGCAAAGGTTTGATATCATTTTTGGCACAGCTCGAGGCATGGAAACTGTATGAGAATGACATGCATTTGAAGCTGGTAGATGACACACTTGACCCAAATGAATACACACCAGAAGAGGCAGAGAAGATCATTGAAATTGCTCTAATGTGCACTCAATCCCCTGTTTCCTTGAGGCCAACTATGTCTGAAGTTGTTGTTTCTCTTTCTAGTGACCGCCCCCTTGACAAAAAACCGACCAACCGCCCTACTCACGTTGACTCTGAACACAGAGTTGTGGGGAATAATACGTCTACTTCGAGTAATAGTAATGCCACTGCTACTTTTACTGAGTTTAGTGGTCGTTAG

Network for GWHGAAZE033488

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	32	124	5.40E-11
PF07714.18	PK_Tyr_Ser-Thr	215	308	6.20E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.642
	SRR3591706	second leaf	8.656
	SRR3591707	mature leaf	46.948
	SRR3591708	Shoot apex	1.091
	SRR3591709	Stem	26.097
	SRR3591710	White floral bud	6.021
	SRR3591711	White flower	22.453
	SRR3591712	Green floral bud	4.122
	SRR3591713	Yellow flower	83.003
SRP173429	SRR8316895	Juvenile bud stage	2.041
	SRR8316896	Juvenile bud stage	5.980
	SRR8316897	Juvenile bud stage	1.530
	SRR8316894	Third green stage	2.833
	SRR8316900	Third green stage	2.045
	SRR8316901	Third green stage	1.867
	SRR8316898	Complete white stage	2.340
	SRR8316899	Complete white stage	11.707
	SRR8316903	Complete white stage	3.117
	SRR8316902	Silver flowering stage	4.507
	SRR8316904	Silver flowering stage	5.774
	SRR8316905	Silver flowering stage	2.729
	SRR8316906	Gold flowering stage	26.058
	SRR8316907	Gold flowering stage	10.577
	SRR8316908	Gold flowering stage	21.301
SRP132670	SRR6706286	Control	10.544
	SRR6706287	Light intensity 50%	6.151
	SRR6706288	Light intensity 20%	3.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.269
	CNS0095593	Slightly white alabastrum(diploid) 2	2.948
	CNS0095594	Slightly white alabastrum(diploid) 3	3.834
	CNS0095595	Whole white alabastrum(diploid) 2	1.673
	CNS0095596	Whole white alabastrum(diploid) 3	0.107
	CNS0095597	Whole white alabastrum(diploid) 4	2.228
	CNS0095598	Silvery flower (diploied) 1	7.314
	CNS0095599	Silvery flower (diploied) 2	3.656
	CNS0095600	Silvery flower (diploied) 3	9.684
	CNS0095601	Golden flower (diploid) 1	7.006
	CNS0095602	Golden flower (diploid) 2	16.648
	CNS0095603	Golden flower (diploid) 3	15.314
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.499
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.902
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.609
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.675
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.378
	CNS0095610	Silvery flower (tetraploid) 1	14.294
	CNS0095611	Silvery flower (tetraploid) 2	4.887
	CNS0095612	Silvery flower (tetraploid) 3	9.754
	CNS0095613	Golden flower (tetraploid) 1	31.866
	CNS0095614	Golden flower (tetraploid) 2	24.983
	CNS0095615	Golden flower (tetraploid) 3	23.925
CRA001975	CRR073297	Stem 1	0.680
	CRR073298	Stem 2	1.233
	CRR073299	Stem 3	0.654
	CRR073300	Leaf 1	0.430
	CRR073301	Leaf 2	1.467
	CRR073302	Leaf 3	1.234
	CRR073303	Juvenile bud 1	0.178
	CRR073304	Juvenile bud 2	0.216
	CRR073305	Juvenile bud 3	0.966
	CRR073306	Third green 1	1.131
	CRR073307	Third green 2	1.634
	CRR073308	Third green 3	1.946
	CRR073309	Second white 1	8.678
	CRR073310	Second white 2	12.576
	CRR073311	Second white 3	18.534
	CRR073312	Silver flowering 1	29.140
	CRR073313	Silver flowering 2	23.471
	CRR073314	Silver flowering 3	28.595
	CRR073315	Gold flowering 1	19.322
	CRR073316	Gold flowering 2	43.609
	CRR073317	Gold flowering 3	25.656
	CRR073318	Tawny withering 1	9.630
	CRR073319	Tawny withering 2	14.681
	CRR073320	Tawny withering 3	8.133