Gene detail

Detail information of GWHGAAZE033489

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004287176.1	0	PREDICTED: polygalacturonase-like [Fragaria vesca subsp. vesca]
COG	YP_001179193.1	3E-25	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|P48979\|PGLR_PRUPE	0	Polygalacturonase (Precursor)
trEMBL	tr\|W9RN73\|W9RN73_9ROSA	0	Uncharacterized protein {ECO:0000313\|EMBL:EXB88290.1}
TAIR10	AT3G59850.1	2E-143	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1042675	1044365	+
GWHAAZE00000104	mRNA	1042675	1044365	+
GWHAAZE00000104	exon	1042675	1043133	+
GWHAAZE00000104	exon	1043394	1043683	+
GWHAAZE00000104	exon	1043809	1044037	+
GWHAAZE00000104	exon	1044147	1044365	+
GWHAAZE00000104	CDS	1042675	1043133	+
GWHAAZE00000104	CDS	1043394	1043683	+
GWHAAZE00000104	CDS	1043809	1044037	+
GWHAAZE00000104	CDS	1044147	1044365	+

Transcript Sequence
>GWHTAAZE033528 ATGTTGAAGTCATATAGTAGCAGTGCACTTGTTCTCGCACTTGTGTTACATGTAATATTGTACAATCAATCATCACTAGCACTAAGTAGTCCATCAACATACAATGTGATGGATTTAGGAGCTAAGCCAGATGGTAAGACAGACTCAACCAAGGCCTTCCTCGGGGCTTGGGCTGCGGCTTGTGGTTCGGCCAAGCCGAGCTCAATCTACGTGCCATCGGGCAGGTACTTGGTCCAAAAAATGCACTTGAGTGGGCAATGCAAAAACGGTGCTATCACCATTAGGATTGACGGTACATTGGTGGCTCCATCGGATTTTAGGGTCATTGGAAATGCCGGTAACTGGATCTTGTTCGAGGGAGTTAACGGTGTTACGGTTATTGGTGGGGTACTTGACGGCCAAGGCACTGGTTTGTGGTCTTGCAAGTCCTCCGGCAAGGGTTGTCCTAGCGGCGCCACGACATTGGGATTTTCTAATTCCAATAACATTGTGGTCACTGGGTTAACTTCGTTAAACAGCCAAATGTTTCACATTGTCATCAACGGCTGCCACAACGTCAAGATACAAGGAGTTAAGGTTTTGGCCTCCGGCAATAGTCCAAACACGGATGGCATTCATGTACAGTTATCGTCTGGTGTCACTATTTTAAACTCTAAGATTAGTACCGGGGACGATTGCGTCTCAATAGGCCCAGGCACTACCAATTTGTGGATTGAAAACATCGCTTGTGGCCCAGGTCATGGAATCAGCATTGGGAGTCTAGGGAAGGATTACAAAGAAGCTGGAGTACAGAATGTAACCGTTAAAACCGTTACTTTCAAAGGTACGCAAAACGGTCTGAGGATTAAGTCATGGGGTAGGCCGAGCACTGGATTTGTAAGAGGTGTACTTTTCCAGCATGCCATCATGCTCAATGTCCAGAACCCCATTGTAATTGATCAAAATTACTGCCCAGATAACAAGAATTGCCCCGGCCAGGTCTCGGGTGTAAAAATTAGCGATGTAAGGTACGAGGACATACATGGAACATCAGCGACGCAAGTGGCAATGAGATTCGATTGTAGTAAAAGCAATCCATGCAATAACATAAGACTAGAAGACGTAAAGCTCACGTACCGGAATCAACCAGCGACTGCATCTTGCGTTAATGCCGGAGGAACATCTTCCGGCTTAGTTGTGCCCACAAGTTGTTTGTAG

Network for GWHGAAZE033489

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	61	385	4.40E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.080
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.120
	SRR3591709	Stem	0.074
	SRR3591710	White floral bud	0.183
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.717
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.066
	SRR8316896	Juvenile bud stage	0.119
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	1.831
	SRR8316900	Third green stage	2.986
	SRR8316901	Third green stage	7.173
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.115
SRP132670	SRR6706286	Control	5.885
	SRR6706287	Light intensity 50%	5.307
	SRR6706288	Light intensity 20%	3.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.071
	CNS0095593	Slightly white alabastrum(diploid) 2	0.416
	CNS0095594	Slightly white alabastrum(diploid) 3	0.440
	CNS0095595	Whole white alabastrum(diploid) 2	0.137
	CNS0095596	Whole white alabastrum(diploid) 3	0.226
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.178
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.198
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.028
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.060
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.039
	CRR073298	Stem 2	0.447
	CRR073299	Stem 3	0.035
	CRR073300	Leaf 1	0.136
	CRR073301	Leaf 2	0.515
	CRR073302	Leaf 3	2.349
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.045
	CRR073314	Silver flowering 3	0.132
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.852
	CRR073319	Tawny withering 2	1.187
	CRR073320	Tawny withering 3	0.000