Gene detail

Detail information of GWHGAAZE033496

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009782873.1	0	PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Nicotiana sylvestris]
COG	YP_001143288.1	3E-76	alcohol dehydrogenase, zinc-containing
Swissprot	tr\|Q9SLN8\|DBR_TOBAC	0	2-alkenal reductase (NADP(+)-dependent)
trEMBL	tr\|A5BKL3\|A5BKL3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61471.1}
TAIR10	AT5G16990.1	5E-145	Zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1141627	1145107	+
GWHAAZE00000104	mRNA	1141627	1145107	+
GWHAAZE00000104	exon	1141627	1141848	+
GWHAAZE00000104	exon	1143261	1143438	+
GWHAAZE00000104	exon	1143681	1144044	+
GWHAAZE00000104	exon	1144729	1145107	+
GWHAAZE00000104	CDS	1141627	1141848	+
GWHAAZE00000104	CDS	1143261	1143438	+
GWHAAZE00000104	CDS	1143681	1144044	+
GWHAAZE00000104	CDS	1144729	1145107	+

Transcript Sequence
>GWHTAAZE033535 ATGGCGGAAGTGAGCAACAAGCAGGTGATATTGAAGGACTATGTGACTGGATTCCCCAAAGAATCTGACATGATCGCAAAAACTTGTACTATTTCTCTCAAGGTTCCAGAAGGTTCCAAGGCGGTTCTGTTGAAGAATCTCTACCTTTCTTGCGATCCTTACATGAGAACTCGGATGAAGAACATTCAAGGGAGTTCTGTTGAATCCTTCACTCCTGGTTCTCGTATAACTGGTTATGGAGTAGCTAAGGTTTTGGATTCTGGGGATCCAAACTTCAAGAAAGGTGACCTGGTGTGGGGAGTGACTGGATGGGAAGAATACAGCCTCATTACGGCTACAGAGAAATTATTCAAAATTCAACATACTGATGTGCCTCTTTCCTACTACACGGGATTGCTTGGTATGGCTGGTATGACTGCATACGCGGGTTTTTATGAGGTTTGTAGTCCAAAGAAAGGGGAGACTGTCTATGTTTCAGCTGCTTCAGGAGCTGTTGGTCAACTTGTTGGGCAGTTTGCAAAGTTGCTGGGCTGCTATGTTGTTGGAAGTGCTGGAAGCAAAGAAAAGGTCAGTGCCCTTCGCATTGTTCTCTATGCCATTTGTAGTAGTTCATACAAGTCCAATAGCAGCTGGCTTAACTATCTTATCTCTGTGTTTGCAATTTCCCTTTCGTTGCACAAGGTTGATCTGTTGAAGAACAAATTCAGATTTGACGAAGCTTTTAACTATAAAGAGGAGAAGGATTTGGATGCTGCTTTGAAGAGGTACTTCCCCGATGGCATTGATATTTACTTTGAGAATGTTGGTGGGAAAATGCTCGATGCAGTACTCCCCAACATGAGACTCCACGGACGCATAGCCGTCTGCGGTATGATATCGCAATACAATCTTGAGGAGCCCGAAGGTGTACACAACTTGTTCTGCCTCATAACGAAGAGGGTCCGCATGGAAGGATTTGTGGTAGTCGATTACTATCACCTCTATCCCAAGTTTCTCGATCTTGTTCTTCCACAAATAAAGGAAGGGAAAATAGTATACGTGGAAGATATGGCAGAAGGTCTCGAGAGCGCCCCAGCGGCTCTTGTAGGGCTCTTCTCTGGCCGCAATGTTGGAAAACAGGTCGTGGTCGTTTCTCGCGAGTGA

Network for GWHGAAZE033496

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0102

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16884.6	ADH_N_2	7	113	1.20E-24
PF00107.27	ADH_zinc_N	216	335	2.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.800
	SRR3591706	second leaf	106.717
	SRR3591707	mature leaf	92.544
	SRR3591708	Shoot apex	78.262
	SRR3591709	Stem	52.689
	SRR3591710	White floral bud	42.256
	SRR3591711	White flower	28.952
	SRR3591712	Green floral bud	72.376
	SRR3591713	Yellow flower	13.424
SRP173429	SRR8316895	Juvenile bud stage	60.737
	SRR8316896	Juvenile bud stage	76.885
	SRR8316897	Juvenile bud stage	71.364
	SRR8316894	Third green stage	31.461
	SRR8316900	Third green stage	120.601
	SRR8316901	Third green stage	107.706
	SRR8316898	Complete white stage	47.221
	SRR8316899	Complete white stage	202.261
	SRR8316903	Complete white stage	63.732
	SRR8316902	Silver flowering stage	10.165
	SRR8316904	Silver flowering stage	13.780
	SRR8316905	Silver flowering stage	4.528
	SRR8316906	Gold flowering stage	16.563
	SRR8316907	Gold flowering stage	15.609
	SRR8316908	Gold flowering stage	26.767
SRP132670	SRR6706286	Control	81.260
	SRR6706287	Light intensity 50%	79.816
	SRR6706288	Light intensity 20%	83.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.480
	CNS0095593	Slightly white alabastrum(diploid) 2	68.321
	CNS0095594	Slightly white alabastrum(diploid) 3	55.477
	CNS0095595	Whole white alabastrum(diploid) 2	62.749
	CNS0095596	Whole white alabastrum(diploid) 3	59.034
	CNS0095597	Whole white alabastrum(diploid) 4	62.718
	CNS0095598	Silvery flower (diploied) 1	81.516
	CNS0095599	Silvery flower (diploied) 2	87.425
	CNS0095600	Silvery flower (diploied) 3	43.499
	CNS0095601	Golden flower (diploid) 1	83.318
	CNS0095602	Golden flower (diploid) 2	59.766
	CNS0095603	Golden flower (diploid) 3	55.596
	CNS0095604	Slightly white alabastrum(tetraploid) 1	96.690
	CNS0095605	Slightly white alabastrum(tetraploid) 2	91.674
	CNS0095606	Slightly white alabastrum(tetraploid) 3	164.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	59.447
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.733
	CNS0095609	Whole white alabastrum(tetraploid) 3	121.783
	CNS0095610	Silvery flower (tetraploid) 1	52.255
	CNS0095611	Silvery flower (tetraploid) 2	83.294
	CNS0095612	Silvery flower (tetraploid) 3	50.126
	CNS0095613	Golden flower (tetraploid) 1	20.816
	CNS0095614	Golden flower (tetraploid) 2	30.273
	CNS0095615	Golden flower (tetraploid) 3	4.984
CRA001975	CRR073297	Stem 1	141.650
	CRR073298	Stem 2	130.939
	CRR073299	Stem 3	162.777
	CRR073300	Leaf 1	130.638
	CRR073301	Leaf 2	134.299
	CRR073302	Leaf 3	150.092
	CRR073303	Juvenile bud 1	185.540
	CRR073304	Juvenile bud 2	182.534
	CRR073305	Juvenile bud 3	171.177
	CRR073306	Third green 1	37.011
	CRR073307	Third green 2	26.579
	CRR073308	Third green 3	25.685
	CRR073309	Second white 1	25.334
	CRR073310	Second white 2	20.647
	CRR073311	Second white 3	8.660
	CRR073312	Silver flowering 1	8.618
	CRR073313	Silver flowering 2	13.040
	CRR073314	Silver flowering 3	11.701
	CRR073315	Gold flowering 1	316.929
	CRR073316	Gold flowering 2	342.925
	CRR073317	Gold flowering 3	288.105
	CRR073318	Tawny withering 1	113.763
	CRR073319	Tawny withering 2	107.782
	CRR073320	Tawny withering 3	86.925