Gene detail

Detail information of GWHGAAZE033504

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275474.1	0	PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Vitis vinifera]
Swissprot	tr\|P41210\|CATR_ATRNU	0.000004	Caltractin
trEMBL	tr\|D7T2J4\|D7T2J4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI24725.3}
TAIR10	AT1G65540.1	0	LETM1-like protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1205511	1216436	+
GWHAAZE00000104	mRNA	1205511	1216436	+
GWHAAZE00000104	exon	1205511	1205543	+
GWHAAZE00000104	exon	1206227	1206888	+
GWHAAZE00000104	exon	1207004	1207316	+
GWHAAZE00000104	exon	1208182	1208328	+
GWHAAZE00000104	exon	1208425	1208513	+
GWHAAZE00000104	exon	1208619	1208711	+
GWHAAZE00000104	exon	1210600	1210729	+
GWHAAZE00000104	exon	1212126	1212190	+
GWHAAZE00000104	exon	1212303	1212477	+
GWHAAZE00000104	exon	1213189	1213392	+
GWHAAZE00000104	exon	1213556	1213603	+
GWHAAZE00000104	exon	1214383	1214529	+
GWHAAZE00000104	exon	1214691	1214773	+
GWHAAZE00000104	exon	1215011	1215126	+
GWHAAZE00000104	exon	1215967	1216365	+
GWHAAZE00000104	exon	1216390	1216436	+
GWHAAZE00000104	CDS	1205511	1205543	+
GWHAAZE00000104	CDS	1206227	1206888	+
GWHAAZE00000104	CDS	1207004	1207316	+
GWHAAZE00000104	CDS	1208182	1208328	+
GWHAAZE00000104	CDS	1208425	1208513	+
GWHAAZE00000104	CDS	1208619	1208711	+
GWHAAZE00000104	CDS	1210600	1210729	+
GWHAAZE00000104	CDS	1212126	1212190	+
GWHAAZE00000104	CDS	1212303	1212477	+
GWHAAZE00000104	CDS	1213189	1213392	+
GWHAAZE00000104	CDS	1213556	1213603	+
GWHAAZE00000104	CDS	1214383	1214529	+
GWHAAZE00000104	CDS	1214691	1214773	+
GWHAAZE00000104	CDS	1215011	1215126	+
GWHAAZE00000104	CDS	1215967	1216046	+
GWHAAZE00000104	three_prime_UTR	1216047	1216365	+
GWHAAZE00000104	three_prime_UTR	1216390	1216436	+

Transcript Sequence
>GWHTAAZE033543 ATGCCAACGGAATTAGGGCACAGGATCAGTAAGTTGATTGATAACTGTGATTGTGCTTCTCCTAGAGAAGAAGTGGATAATGGCTTCCCGAGCAATTTTAAGGAGGAAAATGTTGTTTCCGCGTACCTGAATATCTCTACTCGCTCAATTCATACTTTACAAAATCTAGGTCATGGTGACTCTACTCAAAATTTGGGCGAGTCCCACTCTCATCAACTACTGAGCTCTGCTGCAAATCAATTTTCTCAAGATTTGGACAGCAGAAGAAAGATTGGCGGCGAAAATGCACTGGCTAATGAGGAATTAATGAAATTTTCTGCCCAAAGACTATTCAGGAGCACTTATTATGGAATAACACCATCTGGGTGCGTAAATAGAAAGCTAGAACTTATTTATCCCATGGGGACAAGGCTGATGTCACAATCTATACGTTATAAGTCCACAGCCACAGCTGGTCAACGTGATTTGGGGAATGAAGATGATCAAGATAATGATGAAATGGTTGCTAAGAAGAGAAAGGAAGCATCTCCAGAGGAATGTGATGAAGCTGTTGAAGGTCTAAGTAGTGCCAAGGCGAAAGCAAAAGCCAAAAAGTTGCTAGAATCACAGAAGGCTGCTAAATCTGTTTTACAAAGAATATGGGCCACAATTTTGGGGATTGGTCCAGCTTTGAGAGCTGTAGCTTCTATGAGCAGGGAAGATTGGGGCAAGAAACTTGTACACTGGAAGCATGAAATTGTATCAACGCTGCAGCATTATTGGTTGGGCTTGAAGCTTCTCTGGGTTGATGTGAGGATCAGTTCTAGATTGCTGCTAAAGCTTGCTGGTGGCAAGAATCTCACTAGAAGGGAGAGGCAACAACTTACACGAACCACAGCTGATATATTCAGACTAGTTCCATTTGCTGTTTTTATCATAGTCCCCTTCATGGAATTCTTGTTGCCGGTATTCCTCAAGTTGTTTCCCAACATGTTACCTTCAACCTTCCAAGACAAGATGAAAGAGCAGGAAGCATTGAAAAGGAAGTTAAATGCAAGAATAGAATATGCAAAATTTCTTCAGGATACAGTCAAAGAGATGGCAAAGGAAGTCCAAAATTCACGGAGTGGAGAAATCAAGAAAACAGCAGAAGATCTTGACGAATTTTTGAGCAGGGTCAGAACAGGTGGTGGTGTCGCTAATGATGAGATTTTAGGGTTTGCGAAGTTGTTCAATGATGAACTTACACTAGATAATATTAGCAGGCCTCGACTTGTGAACATGTGTAAATATATGGGCATCGCTCCTTTCGGTACGGATGCATATTTGCGTTATATGCTTCGGAAAAGATTGCAATGGATAAAAGCAGATGATAAACTAATTCAAGCAGAGGGTGGCGTGGAGGCTCTCTCAGAAGATGAACTTCGTGAAGATTGTAGAGAGCGAGGAATGCTTGGATTACTTTCAGTAGAAGAGATGCGTCAACAGCTTCGTGATTGGTTGGATCTGTCTCTCAATCACTCAGTACCATCTTCACTTTTGATACTTTCCAGAGCCTTCACCGTGTCTGGAAGGATAAGGCCAGAGGAAGCAGTTCGGGCTACACTGTCTTCACTCCCAGATGAGGTTGTGGATACTGTTGGTGTCACTGCATTGCCATCTGAAGATTCTGTTTCTGAAAGGAGGAGAAAATTGGAGTTCCTTGAAATGCAGGAAGAACTCATCAAGGAGGAGGAAGAGAAACAGGAAGAAGAGCAAGCGAGAATGAAGGAATCTGTTGTTGGTAGTGAAGAGGATGTTGCTTTGAAAGAGATGACCACTCCAACAACAGCAAGAGAAGAGCCACAAGAACAAGCTAGAGAAAGAGCACTTGACAAACAAGAGCAACTTTGTCAACTCAGTCGTGCTTTGGCTGTTTTAGCTTCTGCTTCTTCTGTGAGTAGGGAGCGTGAACAATTCTTGCAGCTCGTCAATAAGGAGATAGAGCTTTATAATAGCATGGTGGACAAAGAGGGTACAGATGGTGAAGCAGAGGCCATGAAAGCATATAGAGCTGCCCGGGAGGAAACTGAAGATTCTGCTGAAGTGGAAGTCGGTGACAAGGTTTCATCAGCACTTGTTGATAGGGTTGACGCTATGCTCCAAAACCTTGAAAAGGAAATTGATGATGTGGATGCCAAGATTGGTGATCGTTGGCGAGTACTGGACAGAGATTATGATGGGAAAGTAACCCCAGAGGAGGTGGCATCTGCAGCTTCTTATTTGAAAGATACTTTAGGCAAAGAAGGGATTCAAGAACTCATCAGCAGCCTTTCCAAAGATAAAGATGGGAAGATTCTTGTTGAAGATATAGTGAAGTTGGGCAGCAAGCTTGAAGATGTCAATTCAACTGAAGAGGGCCAGTAAATACAGTATTAATCACCCCACTCCCCTCTCTTCTTTCACTCCTTTTGTTTTTTCAACCCTTCTAGTGGGTAGTCTTTGAGAGTTGGTCCAATATTCATTCATCAATTCTCCGTATGGCTAGGTGATCTTTGAAATGGTTTCCTAGTCGATATTTTGTAGGCTCGCACATTAGTATTCTACATATACGAATTTGATATACACACATATAGAGACACCTAAACCAAAGCTATGTACACAATGGTGCCTTTTTTGTAGGTCTTTTAATACCTTCCTTGGTATTTGGCAATAATTCTCCTCAACTACTTCCATTCTTGGCAATGATGGTTACGGTGTCCTCCATTGTGTTTTGGAATTATTACAAACTAA

Network for GWHGAAZE033504

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07766.14	LETM1	243	510	1.00E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17800	LETM1, MDM38	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding
GO:0043022	molecular_function	ribosome binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.092
	SRR3591706	second leaf	22.703
	SRR3591707	mature leaf	24.034
	SRR3591708	Shoot apex	27.039
	SRR3591709	Stem	32.454
	SRR3591710	White floral bud	36.898
	SRR3591711	White flower	54.847
	SRR3591712	Green floral bud	36.546
	SRR3591713	Yellow flower	44.172
SRP173429	SRR8316895	Juvenile bud stage	30.734
	SRR8316896	Juvenile bud stage	40.463
	SRR8316897	Juvenile bud stage	21.130
	SRR8316894	Third green stage	18.707
	SRR8316900	Third green stage	51.953
	SRR8316901	Third green stage	48.218
	SRR8316898	Complete white stage	19.749
	SRR8316899	Complete white stage	50.688
	SRR8316903	Complete white stage	38.476
	SRR8316902	Silver flowering stage	28.387
	SRR8316904	Silver flowering stage	37.786
	SRR8316905	Silver flowering stage	19.765
	SRR8316906	Gold flowering stage	76.691
	SRR8316907	Gold flowering stage	72.414
	SRR8316908	Gold flowering stage	75.847
SRP132670	SRR6706286	Control	30.880
	SRR6706287	Light intensity 50%	34.780
	SRR6706288	Light intensity 20%	33.627
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.283
	CNS0095593	Slightly white alabastrum(diploid) 2	27.776
	CNS0095594	Slightly white alabastrum(diploid) 3	28.995
	CNS0095595	Whole white alabastrum(diploid) 2	28.736
	CNS0095596	Whole white alabastrum(diploid) 3	28.214
	CNS0095597	Whole white alabastrum(diploid) 4	25.423
	CNS0095598	Silvery flower (diploied) 1	30.319
	CNS0095599	Silvery flower (diploied) 2	30.787
	CNS0095600	Silvery flower (diploied) 3	48.298
	CNS0095601	Golden flower (diploid) 1	25.476
	CNS0095602	Golden flower (diploid) 2	42.538
	CNS0095603	Golden flower (diploid) 3	40.650
	CNS0095604	Slightly white alabastrum(tetraploid) 1	30.787
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.714
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.496
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.195
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.305
	CNS0095610	Silvery flower (tetraploid) 1	45.543
	CNS0095611	Silvery flower (tetraploid) 2	38.643
	CNS0095612	Silvery flower (tetraploid) 3	32.884
	CNS0095613	Golden flower (tetraploid) 1	23.403
	CNS0095614	Golden flower (tetraploid) 2	39.015
	CNS0095615	Golden flower (tetraploid) 3	36.550
CRA001975	CRR073297	Stem 1	40.988
	CRR073298	Stem 2	40.304
	CRR073299	Stem 3	36.576
	CRR073300	Leaf 1	39.623
	CRR073301	Leaf 2	37.898
	CRR073302	Leaf 3	34.070
	CRR073303	Juvenile bud 1	41.064
	CRR073304	Juvenile bud 2	31.069
	CRR073305	Juvenile bud 3	49.913
	CRR073306	Third green 1	17.493
	CRR073307	Third green 2	15.705
	CRR073308	Third green 3	20.187
	CRR073309	Second white 1	32.719
	CRR073310	Second white 2	34.254
	CRR073311	Second white 3	33.559
	CRR073312	Silver flowering 1	26.862
	CRR073313	Silver flowering 2	31.323
	CRR073314	Silver flowering 3	26.138
	CRR073315	Gold flowering 1	18.278
	CRR073316	Gold flowering 2	27.625
	CRR073317	Gold flowering 3	14.957
	CRR073318	Tawny withering 1	29.331
	CRR073319	Tawny withering 2	28.591
	CRR073320	Tawny withering 3	24.985