Gene detail

Detail information of GWHGAAZE033510

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN36791.1	4.63641E-32	60S ribosomal protein L5 [Glycine soja]
Swissprot	tr\|P49227\|RL52_ARATH	1E-31	60S ribosomal protein L5-2
trEMBL	tr\|K7KZY0\|K7KZY0_SOYBN	1E-32	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G06590.2}
TAIR10	AT5G39740.2	3E-27	ribosomal protein L5 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1297259	1298629	-
GWHAAZE00000104	mRNA	1297259	1298629	-
GWHAAZE00000104	exon	1298361	1298629	-
GWHAAZE00000104	exon	1298223	1298281	-
GWHAAZE00000104	exon	1297695	1297768	-
GWHAAZE00000104	exon	1297259	1297399	-
GWHAAZE00000104	CDS	1298361	1298629	-
GWHAAZE00000104	CDS	1298223	1298281	-
GWHAAZE00000104	CDS	1297695	1297768	-
GWHAAZE00000104	CDS	1297259	1297399	-

Transcript Sequence
>GWHTAAZE033549 ATGGCCGAAGTAACAGAGGATAGGTCAAATACACACCCAGTTGGGTGTCACATCCAAACCCCAAAAGAGATGTCACACCCAACCGGGGGTGTAGGGTTAGCTACACTCTCTTTTGGGGTTTGGATGTCACACCCAACCGGGTGTGTATTTGACCTGTCATCTGTTACTTCAGCCATCCTAAAACCGGAAAAGGGTGGTGCTGTAACAGTAACTCTAAGTTTTCAAGGATTTTTTGAAACCCAACAAAATCGACCTTGCAAGTGGGAGAGGCAAAAAAATAATTGCTCCCCGAACTTTGAGGATAGAAAATGTTTCTCTTTTGGGAAAGAGGGGAAGACAGATTACAGGGCCAGGATTCGTCTAATTAACCAGGACAAGTACAACACTCCAAAGTACCGATTTACAAACAAGGATATTATTGCACAAATAGTATCTGCCAGCATTGCTGGTGATATGGTTCATGCTGTAGCCTTTGCCCACGAGCTTCCTCGATATGGGCTTGAAGTAGGTCTCACCAATTATGCAGCAGTTATATATCAATGA

Network for GWHGAAZE033510

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	109	177	4.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.504
	SRR3591706	second leaf	26.748
	SRR3591707	mature leaf	19.388
	SRR3591708	Shoot apex	21.046
	SRR3591709	Stem	9.870
	SRR3591710	White floral bud	36.104
	SRR3591711	White flower	19.408
	SRR3591712	Green floral bud	48.806
	SRR3591713	Yellow flower	12.435
SRP173429	SRR8316895	Juvenile bud stage	25.028
	SRR8316896	Juvenile bud stage	43.165
	SRR8316897	Juvenile bud stage	56.640
	SRR8316894	Third green stage	18.825
	SRR8316900	Third green stage	37.894
	SRR8316901	Third green stage	45.405
	SRR8316898	Complete white stage	3.058
	SRR8316899	Complete white stage	27.618
	SRR8316903	Complete white stage	8.359
	SRR8316902	Silver flowering stage	3.294
	SRR8316904	Silver flowering stage	5.699
	SRR8316905	Silver flowering stage	2.211
	SRR8316906	Gold flowering stage	4.588
	SRR8316907	Gold flowering stage	5.058
	SRR8316908	Gold flowering stage	10.090
SRP132670	SRR6706286	Control	20.370
	SRR6706287	Light intensity 50%	25.064
	SRR6706288	Light intensity 20%	28.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.943
	CNS0095593	Slightly white alabastrum(diploid) 2	48.220
	CNS0095594	Slightly white alabastrum(diploid) 3	42.157
	CNS0095595	Whole white alabastrum(diploid) 2	42.858
	CNS0095596	Whole white alabastrum(diploid) 3	28.265
	CNS0095597	Whole white alabastrum(diploid) 4	30.311
	CNS0095598	Silvery flower (diploied) 1	18.671
	CNS0095599	Silvery flower (diploied) 2	34.693
	CNS0095600	Silvery flower (diploied) 3	5.074
	CNS0095601	Golden flower (diploid) 1	20.476
	CNS0095602	Golden flower (diploid) 2	9.904
	CNS0095603	Golden flower (diploid) 3	9.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.531
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.598
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.185
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.550
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.940
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.077
	CNS0095610	Silvery flower (tetraploid) 1	6.174
	CNS0095611	Silvery flower (tetraploid) 2	3.439
	CNS0095612	Silvery flower (tetraploid) 3	2.587
	CNS0095613	Golden flower (tetraploid) 1	3.404
	CNS0095614	Golden flower (tetraploid) 2	5.107
	CNS0095615	Golden flower (tetraploid) 3	2.033
CRA001975	CRR073297	Stem 1	24.211
	CRR073298	Stem 2	18.365
	CRR073299	Stem 3	3.941
	CRR073300	Leaf 1	36.051
	CRR073301	Leaf 2	29.625
	CRR073302	Leaf 3	4.263
	CRR073303	Juvenile bud 1	2.899
	CRR073304	Juvenile bud 2	0.371
	CRR073305	Juvenile bud 3	3.103
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.050
	CRR073308	Third green 3	0.086
	CRR073309	Second white 1	0.141
	CRR073310	Second white 2	0.049
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.017
	CRR073313	Silver flowering 2	0.081
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.201
	CRR073316	Gold flowering 2	5.101
	CRR073317	Gold flowering 3	0.201
	CRR073318	Tawny withering 1	5.091
	CRR073319	Tawny withering 2	5.700
	CRR073320	Tawny withering 3	1.858