Gene detail

Detail information of GWHGAAZE033513

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073988.1	2.2065E-139	PREDICTED: 60S ribosomal protein L5-like [Sesamum indicum]
COG	NP_559765.1	5E-25	50S ribosomal protein L18
Swissprot	tr\|Q6UNT2\|RL5_CUCSA	2E-131	60S ribosomal protein L5
trEMBL	tr\|A9PFA8\|A9PFA8_POPTR	2E-138	Uncharacterized protein {ECO:0000313\|EMBL:ERP49343.1}
TAIR10	AT5G39740.2	2E-104	ribosomal protein L5 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1337798	1340788	-
GWHAAZE00000104	mRNA	1337798	1340788	-
GWHAAZE00000104	exon	1340492	1340788	-
GWHAAZE00000104	exon	1340048	1340174	-
GWHAAZE00000104	exon	1339897	1339970	-
GWHAAZE00000104	exon	1339683	1339799	-
GWHAAZE00000104	exon	1338179	1338265	-
GWHAAZE00000104	exon	1337798	1337965	-
GWHAAZE00000104	CDS	1340492	1340788	-
GWHAAZE00000104	CDS	1340048	1340174	-
GWHAAZE00000104	CDS	1339897	1339970	-
GWHAAZE00000104	CDS	1339683	1339799	-
GWHAAZE00000104	CDS	1338179	1338265	-
GWHAAZE00000104	CDS	1337798	1337965	-

Transcript Sequence
>GWHTAAZE033552 ATGTATAACGATATTCGTTTGAATCGGTTTCTGTTATTTAAGTGCTCAACCATTCTTTGTTCTTCATTTCAGGCTTTTGTCAAATCCCAAAAGACAAAGGCATACTTTAAGCGCTATCAGGTTAAGTTTAAGAGAAGAAGGGGTACGTATATATATTTGTTCTTTCGGAAGTTACTTTTTTGTGGGGTCTCACGGTTTAATTTGTTTAATTTGCTCGAATATGCGGCCAGGATTCGTCTAATTTACCAGGACAAGAGCAAGTACAACACTCCAAAGCACCGCTTTGTTGTCCGATTTACAAACAAGGATATTATTGCACAAATAGTATCCGCCAGCATTGCTGGTGATATGGTTCATGCTGCAGCCTATGCCCATGAGCTTCCTCGATATGGGCTTGAAGTAGGTCTCACCAATTATGCAGCAGCTTACTGTACTGGACTTCTATTGGCCCATCGTGTCTTGAAAATGCATGAGATGGATGACGAATATCAAGGCAATGCAACTGGAGAGGATTTCTCAGTTGAACCAGCAGAGAGCAGAAGACCATTCCGCGCACTCCTTGACGTTGGCCTTATTAGAACAACTACTGGGAACCGTGTTTTTGGTACTCTCAAGGGAGCATTGGATGGTGGTTTGGATATTCCTCACAGCGACAAGAGATTTGCTGGCTTTTCAAAGGACTCCAAGAAGCTTGATGCCGAGACTTTGATGGAAGATGAGCCAGAGAAGTACCAAAGTCACTTCTCTTTGTACATCAATAAAGGAATTCAACCAGATGGTGTGGAGGCAATGTACAAGAAAGTTCATGCCGCCATTCGCGCAAATCCTGCTGCTAAGACGTCTGAGAAAAAGCCACCTACGAAGCACAAG

Network for GWHGAAZE033513

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	73	217	2.80E-65
PF14204.7	Ribosomal_L18_c	234	289	1.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.787
	SRR3591706	second leaf	22.562
	SRR3591707	mature leaf	3.283
	SRR3591708	Shoot apex	24.395
	SRR3591709	Stem	8.473
	SRR3591710	White floral bud	19.058
	SRR3591711	White flower	9.711
	SRR3591712	Green floral bud	47.750
	SRR3591713	Yellow flower	5.825
SRP173429	SRR8316895	Juvenile bud stage	33.502
	SRR8316896	Juvenile bud stage	52.410
	SRR8316897	Juvenile bud stage	23.909
	SRR8316894	Third green stage	25.117
	SRR8316900	Third green stage	38.713
	SRR8316901	Third green stage	44.534
	SRR8316898	Complete white stage	4.264
	SRR8316899	Complete white stage	23.793
	SRR8316903	Complete white stage	13.686
	SRR8316902	Silver flowering stage	4.063
	SRR8316904	Silver flowering stage	4.641
	SRR8316905	Silver flowering stage	0.883
	SRR8316906	Gold flowering stage	4.089
	SRR8316907	Gold flowering stage	6.239
	SRR8316908	Gold flowering stage	4.978
SRP132670	SRR6706286	Control	65.634
	SRR6706287	Light intensity 50%	60.309
	SRR6706288	Light intensity 20%	57.752
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.920
	CNS0095593	Slightly white alabastrum(diploid) 2	49.680
	CNS0095594	Slightly white alabastrum(diploid) 3	55.072
	CNS0095595	Whole white alabastrum(diploid) 2	38.782
	CNS0095596	Whole white alabastrum(diploid) 3	40.644
	CNS0095597	Whole white alabastrum(diploid) 4	42.083
	CNS0095598	Silvery flower (diploied) 1	51.015
	CNS0095599	Silvery flower (diploied) 2	25.250
	CNS0095600	Silvery flower (diploied) 3	6.562
	CNS0095601	Golden flower (diploid) 1	45.586
	CNS0095602	Golden flower (diploid) 2	13.545
	CNS0095603	Golden flower (diploid) 3	14.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.199
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.578
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.031
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.107
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.121
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.227
	CNS0095610	Silvery flower (tetraploid) 1	4.880
	CNS0095611	Silvery flower (tetraploid) 2	4.936
	CNS0095612	Silvery flower (tetraploid) 3	6.442
	CNS0095613	Golden flower (tetraploid) 1	2.317
	CNS0095614	Golden flower (tetraploid) 2	2.797
	CNS0095615	Golden flower (tetraploid) 3	1.019
CRA001975	CRR073297	Stem 1	147.881
	CRR073298	Stem 2	115.833
	CRR073299	Stem 3	26.917
	CRR073300	Leaf 1	116.683
	CRR073301	Leaf 2	121.410
	CRR073302	Leaf 3	19.370
	CRR073303	Juvenile bud 1	25.377
	CRR073304	Juvenile bud 2	3.818
	CRR073305	Juvenile bud 3	17.047
	CRR073306	Third green 1	1.416
	CRR073307	Third green 2	0.176
	CRR073308	Third green 3	1.207
	CRR073309	Second white 1	0.703
	CRR073310	Second white 2	2.255
	CRR073311	Second white 3	0.280
	CRR073312	Silver flowering 1	1.004
	CRR073313	Silver flowering 2	0.295
	CRR073314	Silver flowering 3	0.470
	CRR073315	Gold flowering 1	3.122
	CRR073316	Gold flowering 2	6.988
	CRR073317	Gold flowering 3	1.426
	CRR073318	Tawny withering 1	13.508
	CRR073319	Tawny withering 2	27.215
	CRR073320	Tawny withering 3	12.030