Detail information of GWHGAAZE033531


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007163952.15.1702E-104hypothetical protein PHAVU_L002800g [Phaseolus vulgaris]
COGYP_003196624.18E-17isopentenyl-diphosphate delta-isomerase
Swissprottr|O48964|IDI1_CAMAC3E-102Isopentenyl-diphosphate Delta-isomerase I
trEMBLtr|V7D3U4|V7D3U4_PHAVU2E-104Uncharacterized protein {ECO:0000313|EMBL:ESW35946.1}
TAIR10AT3G02780.11E-79isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene5296155827-
GWHAAZE00000108mRNA5296155827-
GWHAAZE00000108exon5296153211-
GWHAAZE00000108exon5403254169-
GWHAAZE00000108exon5429354395-
GWHAAZE00000108exon5577455827-
GWHAAZE00000108CDS5577455827-
GWHAAZE00000108CDS5429354395-
GWHAAZE00000108CDS5403254169-
GWHAAZE00000108CDS5296153211-
Transcript Sequence

Network for GWHGAAZE033531

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00293.29NUDIX211377.60E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01823idi, IDI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0016787molecular_functionhydrolase activity
GO:0004452molecular_functionisopentenyl-diphosphate delta-isomerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf122.593
SRR3591706second leaf176.450
SRR3591707mature leaf21.107
SRR3591708Shoot apex147.068
SRR3591709Stem37.249
SRR3591710White floral bud584.734
SRR3591711White flower313.132
SRR3591712Green floral bud77.901
SRR3591713Yellow flower470.784
SRP173429 SRR8316895Juvenile bud stage 93.937
SRR8316896Juvenile bud stage 71.462
SRR8316897Juvenile bud stage 38.799
SRR8316894Third green stage 21.386
SRR8316900Third green stage 79.206
SRR8316901Third green stage 71.656
SRR8316898Complete white stage 423.024
SRR8316899Complete white stage 96.858
SRR8316903Complete white stage 550.889
SRR8316902Silver flowering stage290.984
SRR8316904Silver flowering stage323.489
SRR8316905Silver flowering stage223.507
SRR8316906Gold flowering stage 591.407
SRR8316907Gold flowering stage 519.825
SRR8316908Gold flowering stage 493.727
SRP132670SRR6706286Control55.796
SRR6706287Light intensity 50%65.331
SRR6706288Light intensity 20%41.274
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1201.302
CNS0095593Slightly white alabastrum(diploid) 2155.025
CNS0095594Slightly white alabastrum(diploid) 3171.977
CNS0095595Whole white alabastrum(diploid) 2155.003
CNS0095596Whole white alabastrum(diploid) 378.148
CNS0095597Whole white alabastrum(diploid) 4131.025
CNS0095598Silvery flower (diploied) 1220.422
CNS0095599Silvery flower (diploied) 2301.018
CNS0095600Silvery flower (diploied) 3519.993
CNS0095601Golden flower (diploid) 1628.082
CNS0095602Golden flower (diploid) 2598.609
CNS0095603Golden flower (diploid) 3579.784
CNS0095604Slightly white alabastrum(tetraploid) 1101.243
CNS0095605Slightly white alabastrum(tetraploid) 2171.826
CNS0095606Slightly white alabastrum(tetraploid) 3170.734
CNS0095607Whole white alabastrum(tetraploid) 186.712
CNS0095608Whole white alabastrum(tetraploid) 267.280
CNS0095609Whole white alabastrum(tetraploid) 360.941
CNS0095610Silvery flower (tetraploid) 1868.997
CNS0095611Silvery flower (tetraploid) 21095.480
CNS0095612Silvery flower (tetraploid) 31708.553
CNS0095613Golden flower (tetraploid) 11531.839
CNS0095614Golden flower (tetraploid) 21367.482
CNS0095615Golden flower (tetraploid) 31933.668
CRA001975CRR073297Stem 159.569
CRR073298Stem 260.879
CRR073299Stem 374.058
CRR073300Leaf 155.775
CRR073301Leaf 250.964
CRR073302Leaf 362.390
CRR073303Juvenile bud 188.051
CRR073304Juvenile bud 2133.443
CRR073305Juvenile bud 388.521
CRR073306Third green 11441.084
CRR073307Third green 21047.681
CRR073308Third green 3986.236
CRR073309Second white 1753.001
CRR073310Second white 2760.743
CRR073311Second white 3534.026
CRR073312Silver flowering 1348.965
CRR073313Silver flowering 2275.161
CRR073314Silver flowering 3251.723
CRR073315Gold flowering 126.215
CRR073316Gold flowering 219.885
CRR073317Gold flowering 324.097
CRR073318Tawny withering 1130.549
CRR073319Tawny withering 2147.630
CRR073320Tawny withering 3160.862