Gene detail

Detail information of GWHGAAZE033535

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001275051.1	5.6756E-135	choline monooxygenase, chloroplastic-like [Solanum tuberosum]
COG	YP_001275338.1	2E-37	Rieske (2Fe-2S) domain-containing protein
Swissprot	tr\|Q9SZR0\|CHMO_ARATH	5E-118	Choline monooxygenase, chloroplastic (Precursor)
trEMBL	tr\|M1BRF2\|M1BRF2_SOLTU	1E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400051201}
TAIR10	AT4G29890.1	4E-96	choline monooxygenase, putative (CMO-like)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	418803	421669	-
GWHAAZE00000108	mRNA	418803	421669	-
GWHAAZE00000108	exon	421626	421669	-
GWHAAZE00000108	exon	421230	421293	-
GWHAAZE00000108	exon	420510	420584	-
GWHAAZE00000108	exon	420190	420399	-
GWHAAZE00000108	exon	419634	419729	-
GWHAAZE00000108	exon	419014	419135	-
GWHAAZE00000108	exon	418803	418896	-
GWHAAZE00000108	CDS	421626	421669	-
GWHAAZE00000108	CDS	421230	421293	-
GWHAAZE00000108	CDS	420510	420584	-
GWHAAZE00000108	CDS	420190	420399	-
GWHAAZE00000108	CDS	419634	419729	-
GWHAAZE00000108	CDS	419014	419135	-
GWHAAZE00000108	CDS	418803	418896	-

Transcript Sequence
>GWHTAAZE033574 TATACTGAACAGATTAAAGATGCTCGTGATTATTTTACCGGCAGGTTAGGAAATGTGGAATATGTGGTATGCAGGGATGATAATGGAGAAGTAAATGCATTTCATAATGGATGGACATACGGGTTGGATGGAGCACTTCTCAAGGCAACTAGATTAACAGGAATCAAGAACTTCAATGTGAATGAATTTGGGCTTGTTCCACTGAAAGTAGCTATATGGGGCCCATTTGTTCTTCTCAATTTGGAAAAGGATGTTGTTCCTCAACCAGAATCTGATAACATTGTAGGCAATGAGTGGCTCGGTAGTTCATCAGAGATACTGAGTACCAATGGAGTCGATTCTTCGTTGAGTTATCTTTGCAGACGCGAGTATACTATTGAATGTAATTGGAAGGTGTTTTGTGACAATTACTTAGATGGTGGCTATCATGTACCATATGCCCATAAGGGACTTGCATCTGGTCTTAAGCTTGATTCTTACTCAACCACGATATTTGAGAAGGTTAGCATCCAAGGATGTGATGTTGGCCAAGTAGGAAGTCAAGATGATTATGATAGGCTCGGGTCAAATGCTTTATATGCATTTGTGTATCCAAACTTCATGATTAATAGGTATGGGCCGTGGATGGACACCAATTTAGTACTTCCATTGGGACACCGGAAGTGCCTAGTGATATTTGATTACTTTCTTGATGCGTCTCTCAAG

Network for GWHGAAZE033535

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00848.20	Ring_hydroxyl_A	121	159	3.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00499	CMO	Metabolic pathways	map01100
K00499	CMO	Glycine, serine and threonine metabolism	map00260

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0044237	biological_process	cellular metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0051537	molecular_function	2 iron, 2 sulfur cluster binding
GO:0005506	molecular_function	iron ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.575
	SRR3591706	second leaf	9.507
	SRR3591707	mature leaf	12.230
	SRR3591708	Shoot apex	6.004
	SRR3591709	Stem	11.314
	SRR3591710	White floral bud	4.356
	SRR3591711	White flower	7.448
	SRR3591712	Green floral bud	3.485
	SRR3591713	Yellow flower	11.115
SRP173429	SRR8316895	Juvenile bud stage	7.820
	SRR8316896	Juvenile bud stage	9.768
	SRR8316897	Juvenile bud stage	3.836
	SRR8316894	Third green stage	3.226
	SRR8316900	Third green stage	8.535
	SRR8316901	Third green stage	8.824
	SRR8316898	Complete white stage	8.264
	SRR8316899	Complete white stage	17.735
	SRR8316903	Complete white stage	13.154
	SRR8316902	Silver flowering stage	11.336
	SRR8316904	Silver flowering stage	14.505
	SRR8316905	Silver flowering stage	5.969
	SRR8316906	Gold flowering stage	23.840
	SRR8316907	Gold flowering stage	23.297
	SRR8316908	Gold flowering stage	22.247
SRP132670	SRR6706286	Control	3.082
	SRR6706287	Light intensity 50%	3.982
	SRR6706288	Light intensity 20%	3.924
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.405
	CNS0095593	Slightly white alabastrum(diploid) 2	7.924
	CNS0095594	Slightly white alabastrum(diploid) 3	3.844
	CNS0095595	Whole white alabastrum(diploid) 2	6.907
	CNS0095596	Whole white alabastrum(diploid) 3	5.604
	CNS0095597	Whole white alabastrum(diploid) 4	4.198
	CNS0095598	Silvery flower (diploied) 1	12.559
	CNS0095599	Silvery flower (diploied) 2	11.398
	CNS0095600	Silvery flower (diploied) 3	15.779
	CNS0095601	Golden flower (diploid) 1	11.779
	CNS0095602	Golden flower (diploid) 2	21.602
	CNS0095603	Golden flower (diploid) 3	18.850
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.521
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.439
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.801
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.944
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.977
	CNS0095610	Silvery flower (tetraploid) 1	39.218
	CNS0095611	Silvery flower (tetraploid) 2	36.601
	CNS0095612	Silvery flower (tetraploid) 3	32.281
	CNS0095613	Golden flower (tetraploid) 1	29.623
	CNS0095614	Golden flower (tetraploid) 2	30.807
	CNS0095615	Golden flower (tetraploid) 3	37.251
CRA001975	CRR073297	Stem 1	1.687
	CRR073298	Stem 2	2.472
	CRR073299	Stem 3	1.335
	CRR073300	Leaf 1	3.472
	CRR073301	Leaf 2	3.132
	CRR073302	Leaf 3	0.701
	CRR073303	Juvenile bud 1	1.117
	CRR073304	Juvenile bud 2	1.897
	CRR073305	Juvenile bud 3	2.527
	CRR073306	Third green 1	1.123
	CRR073307	Third green 2	1.785
	CRR073308	Third green 3	1.076
	CRR073309	Second white 1	5.804
	CRR073310	Second white 2	4.277
	CRR073311	Second white 3	4.389
	CRR073312	Silver flowering 1	3.787
	CRR073313	Silver flowering 2	3.483
	CRR073314	Silver flowering 3	2.836
	CRR073315	Gold flowering 1	6.345
	CRR073316	Gold flowering 2	8.634
	CRR073317	Gold flowering 3	6.999
	CRR073318	Tawny withering 1	4.469
	CRR073319	Tawny withering 2	5.612
	CRR073320	Tawny withering 3	2.902