Gene detail

Detail information of GWHGAAZE033539

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011078612.1	1.5583E-111	PREDICTED: acidic mammalian chitinase-like [Sesamum indicum]
COG	YP_001869900.1	5E-23	glycoside hydrolase family protein
trEMBL	tr\|A0A067L2C8\|A0A067L2C8_JATCU	2E-110	Uncharacterized protein {ECO:0000313\|EMBL:KDP38640.1}
TAIR10	AT4G19810.1	2E-51	Glycosyl hydrolase family protein with chitinase insertion domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	737471	740071	+
GWHAAZE00000108	mRNA	737471	740071	+
GWHAAZE00000108	exon	737471	737930	+
GWHAAZE00000108	exon	738091	738513	+
GWHAAZE00000108	exon	739937	740071	+
GWHAAZE00000108	CDS	737471	737930	+
GWHAAZE00000108	CDS	738091	738513	+
GWHAAZE00000108	CDS	739937	739959	+
GWHAAZE00000108	three_prime_UTR	739960	740071	+

Transcript Sequence
>GWHTAAZE033578 ATGGCCTCCCCCTCGTCTGGATCTTCAGCAATCAAAGGAGCTTATTGGCGTTCATGGCGTGACGACTTCCCACCATCATCCATTGCAACGAAGCTATTTACTCACATCTACTATGCATTCCTCACACCTAACAATGCCACATACAAATTCCAAATCGATGATCCAACCTACCGAAAGCTCATTAACTTCACATCGACTCTTCGTGCAATGAAACCGGCGGTGAAAACACTTGTTTCCATCGGTGGGGCAAATGCTGACCTTTCGTTCTTTTCTAAAATGGCATCAAGTTCGTCTTCGCGTGCAACTTTCATTGAATCCACTATTCAGTTGGCAAGAAAATTTAGTTTTGATGGAATCGATCTTGATTGGCAGTTCCCTAAAACTCCAAATGATATGGACAATTTGGGCAGTTTATTATATGAATGGCGGGCTGCAGTAACAATGGACGCCAGTTGTAATGGGGCACATGCCGCGTTATATGATCCAAAAAGTAAGATAAGCACAAGTGACGGACTTGGGTCATGGATCAAGGCTGGGTTACCAAGCAAGAAGTTCGTTATGGGCTTACCGCTGTTCGGGCATACGTGGACTCTCAAGAATTCAGCATTGAATGGAATCGGAGCCTTGGCTGTAGCGGTAGGCCCCGGAAATGATGGGATAATGCGTTATTCAGAAGTGGAGAAGTTTAATGCGGAAAAAAATGCCACGGTGGTGTACGATGCGTTAACTGTGTCCACATATTCCGTAGCAGGAACATCGTGGATTGGGTACGATGACGTCAACTCAATTAAGGTGAAAATTGAATATGCTCAGACCCAGAAAACGGGTGGGTATTTCTTTTGGACTGTCAATGACGATCATAAATGGAAAATCTCTGAAACAGCTTCAAAGCTATGGAAGCTTTGAGAAATGAGATTTAATTTGGGAGGATTCCACAATGTGTACCTTGAAAAGAAATATGAAGCAATAAGAAGATGACAACTACTTTGAACCCATACTTACCTTTTCTTTTACTTTT

Network for GWHGAAZE033539

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	14	149	2.30E-30
PF00704.29	Glyco_hydro_18	154	286	8.30E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.537
	SRR3591706	second leaf	1.068
	SRR3591707	mature leaf	0.880
	SRR3591708	Shoot apex	1.946
	SRR3591709	Stem	0.837
	SRR3591710	White floral bud	6.229
	SRR3591711	White flower	3.132
	SRR3591712	Green floral bud	4.160
	SRR3591713	Yellow flower	3.688
SRP173429	SRR8316895	Juvenile bud stage	1.701
	SRR8316896	Juvenile bud stage	2.573
	SRR8316897	Juvenile bud stage	1.218
	SRR8316894	Third green stage	1.831
	SRR8316900	Third green stage	5.179
	SRR8316901	Third green stage	5.398
	SRR8316898	Complete white stage	8.290
	SRR8316899	Complete white stage	11.369
	SRR8316903	Complete white stage	11.010
	SRR8316902	Silver flowering stage	2.186
	SRR8316904	Silver flowering stage	2.660
	SRR8316905	Silver flowering stage	1.562
	SRR8316906	Gold flowering stage	4.786
	SRR8316907	Gold flowering stage	2.321
	SRR8316908	Gold flowering stage	8.042
SRP132670	SRR6706286	Control	6.556
	SRR6706287	Light intensity 50%	4.988
	SRR6706288	Light intensity 20%	3.880
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.286
	CNS0095593	Slightly white alabastrum(diploid) 2	4.237
	CNS0095594	Slightly white alabastrum(diploid) 3	1.843
	CNS0095595	Whole white alabastrum(diploid) 2	2.399
	CNS0095596	Whole white alabastrum(diploid) 3	2.545
	CNS0095597	Whole white alabastrum(diploid) 4	2.734
	CNS0095598	Silvery flower (diploied) 1	7.622
	CNS0095599	Silvery flower (diploied) 2	5.420
	CNS0095600	Silvery flower (diploied) 3	4.857
	CNS0095601	Golden flower (diploid) 1	3.243
	CNS0095602	Golden flower (diploid) 2	2.706
	CNS0095603	Golden flower (diploid) 3	2.226
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.817
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.234
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.220
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.255
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.088
	CNS0095610	Silvery flower (tetraploid) 1	0.176
	CNS0095611	Silvery flower (tetraploid) 2	0.364
	CNS0095612	Silvery flower (tetraploid) 3	0.142
	CNS0095613	Golden flower (tetraploid) 1	0.038
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.208
CRA001975	CRR073297	Stem 1	4.444
	CRR073298	Stem 2	3.145
	CRR073299	Stem 3	2.278
	CRR073300	Leaf 1	7.070
	CRR073301	Leaf 2	8.284
	CRR073302	Leaf 3	6.522
	CRR073303	Juvenile bud 1	10.282
	CRR073304	Juvenile bud 2	6.383
	CRR073305	Juvenile bud 3	8.139
	CRR073306	Third green 1	5.239
	CRR073307	Third green 2	2.410
	CRR073308	Third green 3	3.149
	CRR073309	Second white 1	1.017
	CRR073310	Second white 2	1.117
	CRR073311	Second white 3	0.328
	CRR073312	Silver flowering 1	0.198
	CRR073313	Silver flowering 2	0.740
	CRR073314	Silver flowering 3	0.757
	CRR073315	Gold flowering 1	0.588
	CRR073316	Gold flowering 2	0.185
	CRR073317	Gold flowering 3	0.788
	CRR073318	Tawny withering 1	1.792
	CRR073319	Tawny withering 2	4.286
	CRR073320	Tawny withering 3	0.181