Gene detail

Detail information of GWHGAAZE033543

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007014221.1	Plasma membrane ATPase 4 isoform 1 [Theobroma cacao]
COG	YP_005270382.1	plasma-membrane proton-efflux P-type ATPase
Swissprot	tr\|Q03194\|PMA4_NICPL	Plasma membrane ATPase 4
trEMBL	tr\|A0A061GPS2\|A0A061GPS2_THECC	Plasma membrane ATPase 4 isoform 1 {ECO:0000313\|EMBL:EOY31840.1}
TAIR10	AT4G30190.1	H(+)-ATPase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	976231	983605	+
GWHAAZE00000108	mRNA	976231	983605	+
GWHAAZE00000108	exon	976231	976242	+
GWHAAZE00000108	exon	976645	976764	+
GWHAAZE00000108	exon	977036	977272	+
GWHAAZE00000108	exon	977896	978657	+
GWHAAZE00000108	exon	979174	979296	+
GWHAAZE00000108	exon	979397	979501	+
GWHAAZE00000108	exon	979960	980104	+
GWHAAZE00000108	exon	980534	980698	+
GWHAAZE00000108	exon	981184	981422	+
GWHAAZE00000108	exon	981531	981563	+
GWHAAZE00000108	exon	981665	981746	+
GWHAAZE00000108	exon	981873	982033	+
GWHAAZE00000108	exon	982127	982300	+
GWHAAZE00000108	exon	982411	982593	+
GWHAAZE00000108	exon	983082	983263	+
GWHAAZE00000108	exon	983509	983605	+
GWHAAZE00000108	CDS	976231	976242	+
GWHAAZE00000108	CDS	976645	976764	+
GWHAAZE00000108	CDS	977036	977272	+
GWHAAZE00000108	CDS	977896	978657	+
GWHAAZE00000108	CDS	979174	979296	+
GWHAAZE00000108	CDS	979397	979501	+
GWHAAZE00000108	CDS	979960	980104	+
GWHAAZE00000108	CDS	980534	980698	+
GWHAAZE00000108	CDS	981184	981422	+
GWHAAZE00000108	CDS	981531	981563	+
GWHAAZE00000108	CDS	981665	981746	+
GWHAAZE00000108	CDS	981873	982033	+
GWHAAZE00000108	CDS	982127	982300	+
GWHAAZE00000108	CDS	982411	982593	+
GWHAAZE00000108	CDS	983082	983263	+
GWHAAZE00000108	CDS	983509	983605	+

Transcript Sequence
>GWHTAAZE033582 ATGAGCAGCGATGAGAAGATTCCTATTGAAGAAGTGTTTGAGCAGTTGAAATGCAGCCGCGAAGGTTTGAGTGTCGACGAAGGAGCCAACAGGCTTCAAATCTTTGGACCCAACAAATTGGAAGAGAAAAAGGAAAGCAAATTGCTGAAGTTTCTTGGGTTTATGTGGAATCCACTGTCATGGGTGATGGAAATGGCCGCAATTATGGCAATCGCACTGGCTAATGGTGGCGGGAAGCCTCCAGATTGGCAAGACTTCGTGGGCATCATTTGCTTGCTTGTAATCAACTCCACCATTAGTTTCATTGAAGAAAACAATGCCGGAAATGCTGCTGCTGCACTTATGGCTGGCCTTGCTCCCAAAACTAAGGTGCTTAGAGATGGCCGATGGAGCGAGCAGGATGCTGCAATTTTGGTACCAGGAGATATAATTAGCATCAAACTAGGAGATATCATCCCAGCCGATGCTCGTCTTCTGGAAGGTGATGCTTTAAAGGTTGACCAATCTGCCCTTACAGGAGAATCTCTGCCTGTGACCAAGAACCCTTACGATGAAGTTTTCTCGGGCTCAACCTGCAAACAAGGTGAGATTGAGGCCGTTGTCATTGCCACCGGGGTCCACACTTTCTTCGGCAAAGCTGCACATCTAGTGGACAGCACCAACCAAGTGGGCCACTTCCAGAAAGTCTTAACCGCAATCGGGAACTTCTGCATTTGTTCCATAGCCATCGGAATGTTGGTTGAGATCATTGTAATGTATCCGATTCAGCACAGGCCATATAGGAAAGGAATTGATAATCTCCTTGTTCTCTTGATTGGAGGTATTCCCATTGCTATGCCTACTGTTTTGTCGGTCACGATGGCTATTGGATCCCACAGGCTATCTCAGCAGGGTGCCATTACCAAGAGGATGACTGCCATTGAGGAAATGGCTGGGATGGATGTGCTTTGTAGTGACAAGACTGGAACGCTTACCCTTAACAAGCTCAGTGTTGACAAGAACTTGATCGAAGTGTTTGCTAAGGGCGTCGACAAAGAAAATGTCTTGCTTCTCGCTGCTAGGGCTTCTAGGACTGAAAATCAAGACGCCATTGACGCTTGCATTGTTGGAATGCTTGCTGACCCTAAAGAGGCTCGAGCTGGTGTGAGAGAAATACATTTCCTCCCATTCAATCCTGTGGACAAGAGGACTGCTTTGACATACATTGATGGCGAAGGCAACTGGCATAGGGCTAGCAAAGGTGCTCCTGAACAGATCATAACCCTTTGCAATTGCAAGGAGGATGTGAGGAAAAAGGTTCATGCAATTATTGATAAGTTTGCTGAACGTGGACTCCGTTCCTTGGCCGTTGCACGACAGGAAGTGCCTCAGAAATCGAAAGATAGTCCAGGTGGGCCGTGGCAATTCGTTGGATTGCTTCCCCTCTTTGATCCTCCAAGGCATGATAGTGCTGAGACCATCCGAAGGGCTCTCAATCTTGGCGTTAACGTTAAAATGATTACTGGTGATCAACTTGCTATTGCTAAGGAAACTGGCCGAAGACTTGGAATGGGAACAAATATGTATCCGTCTTCTTCTTTACTGGGTCAACACAAGGATGCATCCATAGCTGTAATCCCTGTAGAAGAGTTGATTGAGAAGGCTGACGGATTTGCTGGCGTTTTCCCAGAACACAAGTATGAGATAGTGAAGAAGCTGCAAGAGAGGAAGCACATTTGTGGGATGACTGGAGATGGTGTTAATGATGCCCCAGCTTTGAAGAAGGCTGATATCGGAATTGCAGTTGCCGATGCCACTGATGCTGCCAGGGGCGCTTCAGACATTGTACTTACGGAGCCTGGCCTTAGTGTTATTATCAGTGCAGTGCTCACCAGTAGAGCTATCTTCCAGAGAATGAAAAATTATACGATATATGCAGTGTCCATCACAATCCGTATTGTGTTTGGGTTCCTGTTTATTGCTTTGATTTGGAAGTTCGACTTCTCTCCGTTCATGGTTCTTATCATTGCCATCCTAAATGACGGAACAATTATGACAATTTCAAAGGATCGAGTGGTGCCTTCCCCACTACCCGATAGCTGGAAACTGAAAGAGATATTTGCTACCGGTATTGTACTCGGAGGTTACTTGGCCTTGATGACTGTCATATTCTTCTGGATCATGAATGAAACCGATTTTTTCTCGGACAAGTTTGGCGTAAAATCTATTAGGAATCATCCTGACGAAATGATGGCTGCTTTATACCTGCAAGTGAGTATAGTGAGCCAGGCTCTGATTTTCGTCACTCGGTCTCGAAGTTGGTCATTTCTTGAACGTCCTGGACTTTTATTAGTCAGCGCTTTCTTCGTGGCTCAGCTGGTGGCAACTCTGATTGCGGTTTACGCAAACTGGGGTTTTGCTAGAATTCAAGGAGTCGGTTGGGGATGGGCCGGTGTGGTGTGGCTTTACAGTATCGTATTCTATTTCCCTCTCGACATAATGAAATTCGCCATTCGTTACATATTGAGTGGCAAGGCATGGCTCAATTTGCTTGATAACAAGACTGCTTTCACCACCAAGAAGGATTACGGAAAAGAGGAGAGAGAAGCTCAATGGGCTCTTGCGCAAAGGACCTTACACGGGCTTCAACCACCAGAAGCCTCCAACATCTTCAACGAGAAAAGCAGTTACAGAGAGCTCTCAGAAATTGCAGAACAGGCCAAGAGGCGAGCTGAAGTTGCAAGGCTTCGAGAGCTACTCACACTCAAGGGGCACGTTGAGTCGGTGGTGAAGCTAAAAGGACTTGACATCGATACGATTCAACAACATTACACAGTGTGA

Network for GWHGAAZE033543

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	6	69	2.90E-13
PF00122.21	E1-E2_ATPase	119	296	2.70E-48
PF00702.27	Hydrolase	313	590	1.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01535	PMA1, PMA2	Metabolic pathways	map01100
K01535	PMA1, PMA2	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0120029	biological_process	proton export across plasma membrane
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding
GO:0008553	molecular_function	proton-exporting ATPase activity, phosphorylative mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	238.740
	SRR3591706	second leaf	231.545
	SRR3591707	mature leaf	273.874
	SRR3591708	Shoot apex	110.891
	SRR3591709	Stem	343.430
	SRR3591710	White floral bud	430.732
	SRR3591711	White flower	392.775
	SRR3591712	Green floral bud	246.940
	SRR3591713	Yellow flower	240.165
SRP173429	SRR8316895	Juvenile bud stage	74.585
	SRR8316896	Juvenile bud stage	139.106
	SRR8316897	Juvenile bud stage	53.021
	SRR8316894	Third green stage	50.454
	SRR8316900	Third green stage	140.398
	SRR8316901	Third green stage	116.808
	SRR8316898	Complete white stage	91.379
	SRR8316899	Complete white stage	182.409
	SRR8316903	Complete white stage	206.240
	SRR8316902	Silver flowering stage	146.675
	SRR8316904	Silver flowering stage	267.225
	SRR8316905	Silver flowering stage	125.239
	SRR8316906	Gold flowering stage	374.678
	SRR8316907	Gold flowering stage	310.054
	SRR8316908	Gold flowering stage	460.726
SRP132670	SRR6706286	Control	209.317
	SRR6706287	Light intensity 50%	201.180
	SRR6706288	Light intensity 20%	208.316
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	80.919
	CNS0095593	Slightly white alabastrum(diploid) 2	85.272
	CNS0095594	Slightly white alabastrum(diploid) 3	83.713
	CNS0095595	Whole white alabastrum(diploid) 2	72.148
	CNS0095596	Whole white alabastrum(diploid) 3	58.576
	CNS0095597	Whole white alabastrum(diploid) 4	84.683
	CNS0095598	Silvery flower (diploied) 1	77.281
	CNS0095599	Silvery flower (diploied) 2	94.080
	CNS0095600	Silvery flower (diploied) 3	251.410
	CNS0095601	Golden flower (diploid) 1	51.112
	CNS0095602	Golden flower (diploid) 2	190.830
	CNS0095603	Golden flower (diploid) 3	186.260
	CNS0095604	Slightly white alabastrum(tetraploid) 1	69.634
	CNS0095605	Slightly white alabastrum(tetraploid) 2	66.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	144.920
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.412
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.829
	CNS0095609	Whole white alabastrum(tetraploid) 3	221.629
	CNS0095610	Silvery flower (tetraploid) 1	212.616
	CNS0095611	Silvery flower (tetraploid) 2	146.424
	CNS0095612	Silvery flower (tetraploid) 3	200.072
	CNS0095613	Golden flower (tetraploid) 1	78.954
	CNS0095614	Golden flower (tetraploid) 2	249.124
	CNS0095615	Golden flower (tetraploid) 3	128.644
CRA001975	CRR073297	Stem 1	114.739
	CRR073298	Stem 2	117.467
	CRR073299	Stem 3	134.680
	CRR073300	Leaf 1	162.221
	CRR073301	Leaf 2	139.191
	CRR073302	Leaf 3	140.639
	CRR073303	Juvenile bud 1	173.121
	CRR073304	Juvenile bud 2	159.877
	CRR073305	Juvenile bud 3	259.479
	CRR073306	Third green 1	515.150
	CRR073307	Third green 2	414.862
	CRR073308	Third green 3	474.869
	CRR073309	Second white 1	246.653
	CRR073310	Second white 2	222.016
	CRR073311	Second white 3	195.164
	CRR073312	Silver flowering 1	319.115
	CRR073313	Silver flowering 2	349.535
	CRR073314	Silver flowering 3	327.155
	CRR073315	Gold flowering 1	144.002
	CRR073316	Gold flowering 2	192.544
	CRR073317	Gold flowering 3	235.264
	CRR073318	Tawny withering 1	368.924
	CRR073319	Tawny withering 2	426.643
	CRR073320	Tawny withering 3	221.590