Gene detail

Detail information of GWHGAAZE033546

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009790358.1	2.41413E-55	PREDICTED: signal recognition particle receptor subunit alpha homolog [Nicotiana sylvestris]
COG	YP_875271.1	1E-16	signal recognition particle GTPase
Swissprot	tr\|O80842\|CFTSY_ARATH	0.0000009	Cell division protein FtsY homolog, chloroplastic (Precursor)
trEMBL	tr\|J3LJ11\|J3LJ11_ORYBR	2E-54	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB03G10370.1}
TAIR10	AT4G30600.1	6E-44	signal recognition particle receptor alpha subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	1058605	1061660	-
GWHAAZE00000108	mRNA	1058605	1061660	-
GWHAAZE00000108	exon	1061450	1061660	-
GWHAAZE00000108	exon	1060608	1060679	-
GWHAAZE00000108	exon	1060322	1060417	-
GWHAAZE00000108	exon	1060075	1060213	-
GWHAAZE00000108	exon	1059892	1059977	-
GWHAAZE00000108	exon	1059620	1059766	-
GWHAAZE00000108	exon	1059403	1059462	-
GWHAAZE00000108	exon	1058605	1059240	-
GWHAAZE00000108	five_prime_UTR	1061450	1061660	-
GWHAAZE00000108	five_prime_UTR	1060608	1060679	-
GWHAAZE00000108	five_prime_UTR	1060322	1060417	-
GWHAAZE00000108	five_prime_UTR	1060127	1060213	-
GWHAAZE00000108	CDS	1060075	1060126	-
GWHAAZE00000108	CDS	1059892	1059977	-
GWHAAZE00000108	CDS	1059620	1059766	-
GWHAAZE00000108	CDS	1059403	1059462	-
GWHAAZE00000108	CDS	1059106	1059240	-
GWHAAZE00000108	three_prime_UTR	1058605	1059105	-

Transcript Sequence
>GWHTAAZE033585 GGAGGAACCAAGGAAAAAGATAACAAAGAAGAACAGAGTTTGGGATGATCACCTCGAGAGTCAAAAATTGGACTTTACAAACCCAACGAGTGAGAATGGGGAAGGGAATATGGTGGTGGTTGCTGCATATCAAGGTGAGAGTATGATGGACAAAGAGGAGATTTTTAGCAGTGATAGTGAAGAGGATGATGAAGCCGAGAAAGATAGAAAGGAAAATTTGGAGAAGGCAGATCTAGAACCAGCTTTGAAAGCTCTCAAGGATAGGCTCATGACCAATAATGTGGCTGATGAAATAGCTGAAAAACTTTGTGAATCAGTTGCAGCAAGTCTCGAGAGTAAAAAACATGCCTCATTCACAAGGATATCATCAACGATGCAAGCGGCAATGAAGAGGGTGCATCTTGACTCACAAACGCTCCATTGACATTATGAGGGATGTTCATGCTGCGAAGGAACAGAGGAAGACATGTGTCGTTTTGTTGGAGTTAATGGAGTTCAAAATCCACCAACCTTGCCAGGTTGCTTATATGTAACAATGGCTGCATGTGATACATTCCGCTCAGGAGCTGTTGAACAGCCACATACTCATGCACGAAGACTCCAGTGGTACGTCACTTGTAATGTACTCCAGATTCCTATATTTGAGAAGGGTTATGAGAAAGATCCTGATATTGTTGCAAAGGAGGCAGTACAGGAGACATCTCGAAATGGTTCGGATGTGGTTCTTGTTGATACAGGAGGTCGTATGCAGGATAATGAGCCGCTAATGCGAGCTCTGTCAAAGCTCATCTATGTCAATTGTCCAGATCCGAAACTAGCTGACTTGTCACCCTCTCCTAGTTCTAGGTTGATTGATGGCATCCTGCTTACAAAGTTTGACATCATCGATGATAATATTATGGGCCATGGATCCGGACCTGGACCTGGACGCATGTGGTTCCAATGACCAGTAGTGTTAGTGCTTGCTTTGCACGAAATAAGGGTCACACATTCAGATTATTTTGCTGCACTTATTTTCAGTCTAGCAGTTAGTAGTTTGATATGTCCATGTTTATAGCACTTTAGTGGGTCACGTTGCAATTGCAGAGAGTTTGTAGCAGCATGCTTTTGCAGTGCATTAGTGGCTGTAGCATGAATGAAAAGCCATCTAATTATTGAGTGTCTACTAGACTTCTGGGAGGTGTGGGTTTCCTAGAAAAATCCAATTCCAACAACTATTTCAATTACTCACATTGAGAGACAAAAATAGGTAAGTATAAAAACCGTTTTGTCTATTCTGCCCTTAGTTCGAGACCAATTACGTGCTCGCATTGATGAGAAGATTGCCCGGTTGGAACAAGAGTTGTCAACCTCTCTGCTGGCCAACAGTGCATTCAAGAGATGCTCATGGCCACGAGTGTGAAGCTTGATAGGATGAAATTGCCAAGGAACGGATAGCTTAGTGAGT

Network for GWHGAAZE033546

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00448.23	SRP54	22	114	6.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13431	SRPR	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.600
	SRR3591706	second leaf	2.637
	SRR3591707	mature leaf	2.281
	SRR3591708	Shoot apex	3.127
	SRR3591709	Stem	6.251
	SRR3591710	White floral bud	0.954
	SRR3591711	White flower	1.182
	SRR3591712	Green floral bud	1.168
	SRR3591713	Yellow flower	0.947
SRP173429	SRR8316895	Juvenile bud stage	0.540
	SRR8316896	Juvenile bud stage	0.747
	SRR8316897	Juvenile bud stage	1.490
	SRR8316894	Third green stage	0.402
	SRR8316900	Third green stage	0.774
	SRR8316901	Third green stage	1.573
	SRR8316898	Complete white stage	0.155
	SRR8316899	Complete white stage	1.214
	SRR8316903	Complete white stage	0.297
	SRR8316902	Silver flowering stage	0.293
	SRR8316904	Silver flowering stage	0.703
	SRR8316905	Silver flowering stage	0.287
	SRR8316906	Gold flowering stage	0.822
	SRR8316907	Gold flowering stage	0.732
	SRR8316908	Gold flowering stage	1.265
SRP132670	SRR6706286	Control	0.593
	SRR6706287	Light intensity 50%	0.655
	SRR6706288	Light intensity 20%	0.648
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.696
	CNS0095593	Slightly white alabastrum(diploid) 2	0.703
	CNS0095594	Slightly white alabastrum(diploid) 3	0.449
	CNS0095595	Whole white alabastrum(diploid) 2	1.109
	CNS0095596	Whole white alabastrum(diploid) 3	0.658
	CNS0095597	Whole white alabastrum(diploid) 4	1.117
	CNS0095598	Silvery flower (diploied) 1	1.503
	CNS0095599	Silvery flower (diploied) 2	1.061
	CNS0095600	Silvery flower (diploied) 3	2.046
	CNS0095601	Golden flower (diploid) 1	0.450
	CNS0095602	Golden flower (diploid) 2	2.246
	CNS0095603	Golden flower (diploid) 3	1.526
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.270
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.584
	CNS0095610	Silvery flower (tetraploid) 1	5.057
	CNS0095611	Silvery flower (tetraploid) 2	3.452
	CNS0095612	Silvery flower (tetraploid) 3	2.601
	CNS0095613	Golden flower (tetraploid) 1	3.187
	CNS0095614	Golden flower (tetraploid) 2	3.520
	CNS0095615	Golden flower (tetraploid) 3	1.838
CRA001975	CRR073297	Stem 1	1.434
	CRR073298	Stem 2	1.455
	CRR073299	Stem 3	0.028
	CRR073300	Leaf 1	1.467
	CRR073301	Leaf 2	0.775
	CRR073302	Leaf 3	0.500
	CRR073303	Juvenile bud 1	0.428
	CRR073304	Juvenile bud 2	0.009
	CRR073305	Juvenile bud 3	0.224
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.181
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.009
	CRR073311	Second white 3	0.037
	CRR073312	Silver flowering 1	0.033
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.194
	CRR073315	Gold flowering 1	0.064
	CRR073316	Gold flowering 2	0.422
	CRR073317	Gold flowering 3	0.127
	CRR073318	Tawny withering 1	0.194
	CRR073319	Tawny withering 2	0.314
	CRR073320	Tawny withering 3	0.514