Gene detail

Detail information of GWHGAAZE033552

Functional Annotation

Database	Orthologs	Annotation
Nr	ABC25060.2	ZTL [Ipomoea nil]
Swissprot	tr\|Q94BT6\|ADO1_ARATH	Adagio protein 1
trEMBL	tr\|Q2PQA6\|Q2PQA6_IPONI	ZTL {ECO:0000313\|EMBL:ABC25060.2}
TAIR10	AT5G57360.1	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	1409849	1411309	+
GWHAAZE00000108	mRNA	1409849	1411309	+
GWHAAZE00000108	exon	1409849	1411309	+
GWHAAZE00000108	CDS	1409849	1411309	+

Transcript Sequence
>GWHTAAZE033591 ATGAATAGATTACGTATGATCCCCATATGCGGAGATGACGAAACAGTAACTCATATAATTGGCATTCAGTTCTTCACAGAGGTAAACCTTGATCTGGGACCACTCCCTGGATCATTGGCAAAGGAGAATGTAACAGTATTTGATCGGTTCCGCTCCAGTCTTTCCTCTGATCGAATGGCTCTAGATGTGAACCGGAATATCACACGTGGACTCTGTGGGATACTACAATTGAGTGACGAAGTCATTTCTCTCAAAATTCTTTCGAAGTTGACCCCAAGAGATATTGCATCGGTCGGTTCTGTGTGTAGGCGATTCTATGAGCTGACAAAGAATGAGGATCTATGGAGAATGGTCTGCCAAAATGCTTGGGGTAGTGAAACAACTAGGGTTTTAGAGGCAGTGCCCGGGACTAAGAGACTTGGGTGGGGTAGGTTGGCTCGAGAACTGACTACCCTTGAAGCAGCAGCGTGGAGGAAGCTAACAGTTGGTGGAGCCGTTGAACCCTCTAGGTGCAATTTCAGTGCTTGCGCGGTTGGGAACCGGGTGGTTCTTTTCGGCGGGGAAGGAGTTAACATGCAACCTATGAACGATACCTTCGTATTGGACTTAAACTCAAGCAAACCGGAGTGGCGACATGTCAAAGTCAGTTCACCGCCACCTGGGCGGTGGGGCCACACACTTTCCTGTATGAATGGTTCTCATTTGGTGGTATTTGGAGGGTGTGGGACCCAAGGTTTACTCAACGATGTTTTTATGTTGGATTTGGATGCCAAGCAACCGACTTGGCGAGAGATCTCTAGTTTGGCACCACCAATTCCAAGATCATGGCATAGCTCTTGCACACTTGATGGGTCAAAGTTGATTGTGTCAGGTGGTTGTGCCGATTCCGGGGTACTTCTCAGTGACACTTTCTTGCTTGATCTCTCGATGGAAAAGCCCATTTGGAGAGAGATACCCGTAGCGTGGACCCCACCTTCTCGTCTCGGCCACACGTTGTCCGTGTACGGTGGTCGGAAAATTCTCATGTTCGGCGGTCTTGCCAAGAGTGGTCCCCTCCGGTTCCGATCTAGCGACGTGTTCACAATGGATCTGAGCGAGGACGAACCATGTTGGAGAAGTGTGACTGGCAGTGGAATGCCTGGGGCTGGAAATCCGGGAGGCATAGCTCCACCTCCCAGGCTCGATCACGTTGCTGTGAGCCTACCAGGTGGCAGAATCCTGGTCTTTGGTGGGTCTGTAGCTGGTCTTCACTCAGCCTCACAACTATATATTCTGGACCCAACAGAGGAAAAACCTACGTGGAGAATATTGAATGTACCGGGTCGACCACCAAGGTTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGAACAAGGGCTATTGTACTTGGTGGTCAAACCGGGGAGGAATGGATGCTAAGTGAGCTTCACGAGCTTTCTTTAGCCAGTTCTGTTATTTAA

Network for GWHGAAZE033552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	82	120	1.30E-08
PF13418.7	Kelch_4	170	220	4.20E-11
PF13415.7	Kelch_3	234	281	2.50E-10
PF07646.16	Kelch_2	327	378	9.80E-05
PF07646.16	Kelch_2	394	441	3.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
K12115	ZTL	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.029
	SRR3591706	second leaf	20.646
	SRR3591707	mature leaf	32.204
	SRR3591708	Shoot apex	26.686
	SRR3591709	Stem	29.706
	SRR3591710	White floral bud	142.510
	SRR3591711	White flower	155.478
	SRR3591712	Green floral bud	47.166
	SRR3591713	Yellow flower	123.279
SRP173429	SRR8316895	Juvenile bud stage	14.610
	SRR8316896	Juvenile bud stage	22.344
	SRR8316897	Juvenile bud stage	7.904
	SRR8316894	Third green stage	7.012
	SRR8316900	Third green stage	23.004
	SRR8316901	Third green stage	25.732
	SRR8316898	Complete white stage	96.660
	SRR8316899	Complete white stage	67.371
	SRR8316903	Complete white stage	114.980
	SRR8316902	Silver flowering stage	92.347
	SRR8316904	Silver flowering stage	115.884
	SRR8316905	Silver flowering stage	59.823
	SRR8316906	Gold flowering stage	210.608
	SRR8316907	Gold flowering stage	185.655
	SRR8316908	Gold flowering stage	196.132
SRP132670	SRR6706286	Control	32.802
	SRR6706287	Light intensity 50%	39.061
	SRR6706288	Light intensity 20%	32.972
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.047
	CNS0095593	Slightly white alabastrum(diploid) 2	18.279
	CNS0095594	Slightly white alabastrum(diploid) 3	15.438
	CNS0095595	Whole white alabastrum(diploid) 2	17.562
	CNS0095596	Whole white alabastrum(diploid) 3	13.199
	CNS0095597	Whole white alabastrum(diploid) 4	19.776
	CNS0095598	Silvery flower (diploied) 1	46.042
	CNS0095599	Silvery flower (diploied) 2	45.692
	CNS0095600	Silvery flower (diploied) 3	234.838
	CNS0095601	Golden flower (diploid) 1	53.226
	CNS0095602	Golden flower (diploid) 2	157.950
	CNS0095603	Golden flower (diploid) 3	148.418
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.547
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.665
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.821
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.565
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.630
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.622
	CNS0095610	Silvery flower (tetraploid) 1	189.699
	CNS0095611	Silvery flower (tetraploid) 2	233.357
	CNS0095612	Silvery flower (tetraploid) 3	491.928
	CNS0095613	Golden flower (tetraploid) 1	162.016
	CNS0095614	Golden flower (tetraploid) 2	179.429
	CNS0095615	Golden flower (tetraploid) 3	434.596
CRA001975	CRR073297	Stem 1	37.816
	CRR073298	Stem 2	31.275
	CRR073299	Stem 3	37.763
	CRR073300	Leaf 1	39.782
	CRR073301	Leaf 2	30.890
	CRR073302	Leaf 3	33.714
	CRR073303	Juvenile bud 1	37.309
	CRR073304	Juvenile bud 2	51.691
	CRR073305	Juvenile bud 3	47.089
	CRR073306	Third green 1	302.813
	CRR073307	Third green 2	236.665
	CRR073308	Third green 3	261.121
	CRR073309	Second white 1	337.104
	CRR073310	Second white 2	347.548
	CRR073311	Second white 3	321.773
	CRR073312	Silver flowering 1	281.858
	CRR073313	Silver flowering 2	303.663
	CRR073314	Silver flowering 3	253.488
	CRR073315	Gold flowering 1	22.682
	CRR073316	Gold flowering 2	30.571
	CRR073317	Gold flowering 3	41.376
	CRR073318	Tawny withering 1	33.484
	CRR073319	Tawny withering 2	26.858
	CRR073320	Tawny withering 3	31.564