Gene detail

Detail information of GWHGAAZE033554

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006494367.1	0	PREDICTED: ribosome biogenesis protein BOP1 homolog [Citrus sinensis]
COG	YP_007067253.1	4E-11	WD-40 repeat-containing protein
Swissprot	tr\|A8ID74\|BOP1_CHLRE	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000255\|HAMAP-Rule:MF_03027}
trEMBL	tr\|U5GKE1\|U5GKE1_POPTR	0	Ribosome biogenesis protein BOP1 homolog {ECO:0000256\|HAMAP-Rule:MF_03027}
TAIR10	AT2G40360.1	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	1518162	1526045	+
GWHAAZE00000108	mRNA	1518162	1526045	+
GWHAAZE00000108	exon	1518162	1518272	+
GWHAAZE00000108	exon	1518816	1518944	+
GWHAAZE00000108	exon	1519057	1519191	+
GWHAAZE00000108	exon	1519679	1519833	+
GWHAAZE00000108	exon	1520260	1520377	+
GWHAAZE00000108	exon	1520472	1520573	+
GWHAAZE00000108	exon	1521007	1521163	+
GWHAAZE00000108	exon	1521284	1521392	+
GWHAAZE00000108	exon	1521674	1521776	+
GWHAAZE00000108	exon	1521857	1522007	+
GWHAAZE00000108	exon	1522117	1522249	+
GWHAAZE00000108	exon	1522570	1522673	+
GWHAAZE00000108	exon	1522762	1522829	+
GWHAAZE00000108	exon	1523558	1523635	+
GWHAAZE00000108	exon	1523808	1524030	+
GWHAAZE00000108	exon	1524161	1524245	+
GWHAAZE00000108	exon	1524962	1525140	+
GWHAAZE00000108	exon	1525960	1526045	+
GWHAAZE00000108	CDS	1518162	1518272	+
GWHAAZE00000108	CDS	1518816	1518944	+
GWHAAZE00000108	CDS	1519057	1519191	+
GWHAAZE00000108	CDS	1519679	1519833	+
GWHAAZE00000108	CDS	1520260	1520377	+
GWHAAZE00000108	CDS	1520472	1520573	+
GWHAAZE00000108	CDS	1521007	1521163	+
GWHAAZE00000108	CDS	1521284	1521392	+
GWHAAZE00000108	CDS	1521674	1521776	+
GWHAAZE00000108	CDS	1521857	1522007	+
GWHAAZE00000108	CDS	1522117	1522249	+
GWHAAZE00000108	CDS	1522570	1522673	+
GWHAAZE00000108	CDS	1522762	1522829	+
GWHAAZE00000108	CDS	1523558	1523635	+
GWHAAZE00000108	CDS	1523808	1524030	+
GWHAAZE00000108	CDS	1524161	1524245	+
GWHAAZE00000108	CDS	1524962	1525140	+
GWHAAZE00000108	CDS	1525960	1526045	+

Transcript Sequence
>GWHTAAZE033593 ATGACAACAGATCCTGTTGAGCGTAGCGATAGCAGCGGTGACGAAGATTCTAGTGAACTGAGCATTGAGGCGAGTCATGATGTTCAAAAGCAAAGAAAATTAACTTTGGAGGCTGATGTTCACCAAAGTGACGACGGCTCGAGCGATGATGTTAGTAGTGATAGTGATTATAATGATGATGATCACAGTTGTGAAGAATCCGATCAAGAAATTGAGGGGAGTGATTCATCAGAAGATGAGGACGATGTTTACACAAGTGAAGTAGAGGGCGCTAGTGGTGATGCTGATGGTGATAATGATCATGGTGAAAAAGATCAAAGTGAAAGTGAAGAGTCTCATAATGGAGTTGAGGAGAGTGATTCTTCGGAAGATGAGGTTGCTCCTCGGAATACAGTTGGGGATGTTCCCCTCAGATGGTACGAGGATGAAGAGCATATTGGGTATGATATTTCTGGTAAGAAGTTGAAGAAAAAGGAGAGGCAAGATGCGCTAAATTCATTTCTGGCAAATGCTGATGACTCAAAAAATTGGCGCAAGATCTACGACGAGTATAATGACGAGGATGTTGAACTTACAAAAGAACAGACAAAGCTCATCCGTAGATTGTTTAAAGGAAAGGCACCACATGCTGACTTCGATCCATACGCGCCTTATGTTGATTGGTTCTCCTGGGACGGTGCTAAACATCCACTTTCAAATGCACCAGAACCCAAGAGGCGTTTTATTCCTTCCAAGTGGGAGAGTAAAAAGGTTGTTCAGTATGTTAGGGCAATTAGAAAGGGACTCATAAAATTTGATAAGCCAAAGGAAGAACCAAGGTTCTATCACTTGTGGGGAGATGATTCTAGCTCTAAAGAAAAGTCTGGTGGATTGGCATATATACCCGCGCCAAAGCCTAAGTTGCCAGGTCACGAGGAATCCTATAATCCTTCTTTAGAATACATTCCAACACAGGAAGAGATTAATCAATACCAGCTTATGTTTGAGGAAGACCGGCCTAAATTTATTCCAAAACGGTTTACATCATTGAGAAGCGTTCCGGCATATGATAAATCCCTCAAAGAATCTTTTGAGCGTTGTTTGGATCTCTACTTGTGCCCGAGAGTCCGGAAGAAACGTATTAATATTGATCCCGAGTCATTAAAGCCCAAGCTCCCGAGCCGCAAGGATCTAAAACCTTACCCAACAACATGTTATTTAGAGTACAGAGGACATAATGGTCCGGTTATGTCTATATCTACAGATTCTTCGGGGCAGTGGATTGCTTCTGGTTCGAGTGATGGAACTGTGCGTATTTGGGAGGTTGAAACTGGAAGATGTCTTAGAATCTTTGAGATAGGCGAAGAGGTCAAGCATGTGGCGTGGAATCCTTCTCCTGAGCTTCCGATCTTGGCCGTTGCTGCGGGGCAAGATGTATTTCTCTTGAATGCCGGTTTCGAGGAAGAGGAACAGAGAAGGGTTAAAGAACTATTGCACCTTGAAACTCCTACAACAGTAGACGACTCTGGTGATAGTTCATTTGTTACCTGGGGTCAAGATGATGAACAGGAGGGAATCAAGTTAAAGCACTTTAAGAGTGTTGCTTCAGTAGAATGGCATCGGAAGGGAGACTACTTCTCTATTGTTATGCCAGCTGATATCCTTTCTTATATTTCAAAAGCAATACTAATACACCAGCTTTCGAAGAAAGTTACTCAAAGAATTCCATTCAAATTGCATGGTCTTCCGGTTTCAACAGCTTTCCATCCAACTCGTTCTGTCTTTTTCATCTCGACGAAAAAGAATGTTCGTGTCTACGATCTACTTAAGCTAAAACTAATCAAGAAGCTTGAATCTGGGGCCCGTGAAGTTTCCTCGATTTCTGTTCATCCTGGTGGTGATAATGTTATTGTGGGGACCAGAGAAGGAAAGTTGGGTTGGTTTGATATGGATCTTTCCTCTAAACCTTACAGAATTCTCAAATGCCACCCGAAAGATGTAACAAATGTGGCCTTTCATCGTACATACCCTTTGTTTGCTTCGTGTTCCGATGATTGCACAGTATATGTTTTTCATGGAATGGTTTATTCAGATTTAAACCAGAACCCTCTTATTGTTCCTTTGGAAATTCTTCGAGGGCATTCAAGCGCTAACGGGAGAGGAGTGATGGATTGCAAGTTCCACCCTAGACAGCCGTGGCTATTCACCGCCGGTGCTGATTCTGTGATAAAGCTCTTCTGTAATTAA

Network for GWHGAAZE033554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08145.13	BOP1NT	140	395	3.60E-102
PF00400.33	WD40	398	433	3.20E-09
PF00400.33	WD40	648	684	2.40E-05
PF00400.33	WD40	700	739	0.0011

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006364	biological_process	rRNA processing
GO:0042254	biological_process	ribosome biogenesis
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.195
	SRR3591706	second leaf	24.927
	SRR3591707	mature leaf	15.676
	SRR3591708	Shoot apex	34.396
	SRR3591709	Stem	21.839
	SRR3591710	White floral bud	14.360
	SRR3591711	White flower	15.442
	SRR3591712	Green floral bud	32.861
	SRR3591713	Yellow flower	8.799
SRP173429	SRR8316895	Juvenile bud stage	27.199
	SRR8316896	Juvenile bud stage	38.563
	SRR8316897	Juvenile bud stage	21.115
	SRR8316894	Third green stage	17.574
	SRR8316900	Third green stage	46.632
	SRR8316901	Third green stage	44.113
	SRR8316898	Complete white stage	8.033
	SRR8316899	Complete white stage	39.427
	SRR8316903	Complete white stage	16.938
	SRR8316902	Silver flowering stage	4.902
	SRR8316904	Silver flowering stage	6.990
	SRR8316905	Silver flowering stage	2.446
	SRR8316906	Gold flowering stage	11.820
	SRR8316907	Gold flowering stage	10.996
	SRR8316908	Gold flowering stage	12.136
SRP132670	SRR6706286	Control	32.471
	SRR6706287	Light intensity 50%	32.698
	SRR6706288	Light intensity 20%	34.787
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.698
	CNS0095593	Slightly white alabastrum(diploid) 2	27.209
	CNS0095594	Slightly white alabastrum(diploid) 3	25.487
	CNS0095595	Whole white alabastrum(diploid) 2	27.038
	CNS0095596	Whole white alabastrum(diploid) 3	29.531
	CNS0095597	Whole white alabastrum(diploid) 4	24.328
	CNS0095598	Silvery flower (diploied) 1	16.727
	CNS0095599	Silvery flower (diploied) 2	15.959
	CNS0095600	Silvery flower (diploied) 3	15.999
	CNS0095601	Golden flower (diploid) 1	12.897
	CNS0095602	Golden flower (diploid) 2	14.606
	CNS0095603	Golden flower (diploid) 3	14.551
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.922
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.404
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.189
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.647
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.774
	CNS0095610	Silvery flower (tetraploid) 1	19.154
	CNS0095611	Silvery flower (tetraploid) 2	14.875
	CNS0095612	Silvery flower (tetraploid) 3	11.193
	CNS0095613	Golden flower (tetraploid) 1	7.420
	CNS0095614	Golden flower (tetraploid) 2	17.282
	CNS0095615	Golden flower (tetraploid) 3	7.359
CRA001975	CRR073297	Stem 1	27.213
	CRR073298	Stem 2	23.297
	CRR073299	Stem 3	17.472
	CRR073300	Leaf 1	30.008
	CRR073301	Leaf 2	25.187
	CRR073302	Leaf 3	17.622
	CRR073303	Juvenile bud 1	15.021
	CRR073304	Juvenile bud 2	11.255
	CRR073305	Juvenile bud 3	19.624
	CRR073306	Third green 1	1.595
	CRR073307	Third green 2	0.951
	CRR073308	Third green 3	1.915
	CRR073309	Second white 1	1.571
	CRR073310	Second white 2	2.619
	CRR073311	Second white 3	1.909
	CRR073312	Silver flowering 1	3.490
	CRR073313	Silver flowering 2	2.603
	CRR073314	Silver flowering 3	2.496
	CRR073315	Gold flowering 1	7.336
	CRR073316	Gold flowering 2	10.274
	CRR073317	Gold flowering 3	4.606
	CRR073318	Tawny withering 1	19.499
	CRR073319	Tawny withering 2	14.991
	CRR073320	Tawny withering 3	22.740