Detail information of GWHGAAZE033574


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009618425.10PREDICTED: serine/threonine-protein kinase At5g01020 [Nicotiana tomentosiformis]
COGYP_008151634.16E-27hypothetical protein SCE1572_26190
Swissprottr|Q8GXZ3|Y5102_ARATH2E-156Serine/threonine-protein kinase At5g01020
trEMBLtr|A0A068V0S0|A0A068V0S0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313|EMBL:CDP14231.1}
TAIR10AT2G07180.25E-145Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene23931542407090-
GWHAAZE00000108mRNA23931542407090-
GWHAAZE00000108exon24070182407090-
GWHAAZE00000108exon24048822405045-
GWHAAZE00000108exon23985372398672-
GWHAAZE00000108exon23983042398440-
GWHAAZE00000108exon23967112396834-
GWHAAZE00000108exon23933542393772-
GWHAAZE00000108exon23931542393273-
GWHAAZE00000108CDS24070182407090-
GWHAAZE00000108CDS24048822405045-
GWHAAZE00000108CDS23985372398672-
GWHAAZE00000108CDS23983042398440-
GWHAAZE00000108CDS23967112396834-
GWHAAZE00000108CDS23933542393772-
GWHAAZE00000108CDS23931542393273-
Transcript Sequence

Network for GWHGAAZE033574

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase343054.80E-47
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.271
SRR3591706second leaf8.896
SRR3591707mature leaf9.739
SRR3591708Shoot apex9.782
SRR3591709Stem8.140
SRR3591710White floral bud6.818
SRR3591711White flower5.959
SRR3591712Green floral bud14.066
SRR3591713Yellow flower2.521
SRP173429 SRR8316895Juvenile bud stage 13.233
SRR8316896Juvenile bud stage 17.069
SRR8316897Juvenile bud stage 8.108
SRR8316894Third green stage 3.339
SRR8316900Third green stage 9.185
SRR8316901Third green stage 10.702
SRR8316898Complete white stage 2.130
SRR8316899Complete white stage 17.180
SRR8316903Complete white stage 4.285
SRR8316902Silver flowering stage1.726
SRR8316904Silver flowering stage2.672
SRR8316905Silver flowering stage0.729
SRR8316906Gold flowering stage 3.523
SRR8316907Gold flowering stage 3.394
SRR8316908Gold flowering stage 3.191
SRP132670SRR6706286Control11.084
SRR6706287Light intensity 50%11.921
SRR6706288Light intensity 20%12.266
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.457
CNS0095593Slightly white alabastrum(diploid) 218.398
CNS0095594Slightly white alabastrum(diploid) 320.628
CNS0095595Whole white alabastrum(diploid) 213.752
CNS0095596Whole white alabastrum(diploid) 36.567
CNS0095597Whole white alabastrum(diploid) 410.018
CNS0095598Silvery flower (diploied) 114.181
CNS0095599Silvery flower (diploied) 212.249
CNS0095600Silvery flower (diploied) 37.083
CNS0095601Golden flower (diploid) 111.958
CNS0095602Golden flower (diploid) 211.418
CNS0095603Golden flower (diploid) 310.054
CNS0095604Slightly white alabastrum(tetraploid) 12.839
CNS0095605Slightly white alabastrum(tetraploid) 21.418
CNS0095606Slightly white alabastrum(tetraploid) 37.904
CNS0095607Whole white alabastrum(tetraploid) 12.441
CNS0095608Whole white alabastrum(tetraploid) 21.464
CNS0095609Whole white alabastrum(tetraploid) 35.099
CNS0095610Silvery flower (tetraploid) 12.413
CNS0095611Silvery flower (tetraploid) 23.157
CNS0095612Silvery flower (tetraploid) 31.370
CNS0095613Golden flower (tetraploid) 11.084
CNS0095614Golden flower (tetraploid) 23.357
CNS0095615Golden flower (tetraploid) 30.259
CRA001975CRR073297Stem 19.505
CRR073298Stem 28.303
CRR073299Stem 311.288
CRR073300Leaf 15.777
CRR073301Leaf 29.089
CRR073302Leaf 34.045
CRR073303Juvenile bud 16.447
CRR073304Juvenile bud 22.131
CRR073305Juvenile bud 37.073
CRR073306Third green 10.000
CRR073307Third green 20.086
CRR073308Third green 30.327
CRR073309Second white 10.558
CRR073310Second white 20.182
CRR073311Second white 30.464
CRR073312Silver flowering 10.211
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.022
CRR073315Gold flowering 17.909
CRR073316Gold flowering 215.173
CRR073317Gold flowering 37.855
CRR073318Tawny withering 19.861
CRR073319Tawny withering 29.415
CRR073320Tawny withering 38.469