Detail information of GWHGAAZE033580


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO73366.12.71574E-71hypothetical protein CISIN_1g0433971mg, partial [Citrus sinensis]
COGYP_007053461.12E-35glycogen/starch synthase
Swissprottr|Q0WVX5|SSY4_ARATH3E-39Probable starch synthase 4, chloroplastic/amyloplastic (Precursor)
trEMBLtr|A0A067GDC7|A0A067GDC7_CITSI1E-71Uncharacterized protein {ECO:0000313|EMBL:KDO73366.1} (Fragment)
TAIR10AT4G18240.18E-35starch synthase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene25757922584937+
GWHAAZE00000108mRNA25757922584937+
GWHAAZE00000108exon25757922575974+
GWHAAZE00000108exon25804472580521+
GWHAAZE00000108exon25828092582849+
GWHAAZE00000108exon25830412583146+
GWHAAZE00000108exon25838002583882+
GWHAAZE00000108exon25839992584072+
GWHAAZE00000108exon25848282584937+
GWHAAZE00000108five_prime_UTR25757922575974+
GWHAAZE00000108five_prime_UTR25804472580521+
GWHAAZE00000108five_prime_UTR25828092582841+
GWHAAZE00000108CDS25828422582849+
GWHAAZE00000108CDS25830412583146+
GWHAAZE00000108CDS25838002583882+
GWHAAZE00000108CDS25839992584072+
GWHAAZE00000108CDS25848282584937+
Transcript Sequence

Network for GWHGAAZE033580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00703glgA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.145
SRR3591706second leaf20.842
SRR3591707mature leaf17.802
SRR3591708Shoot apex20.833
SRR3591709Stem103.216
SRR3591710White floral bud16.841
SRR3591711White flower12.891
SRR3591712Green floral bud22.987
SRR3591713Yellow flower13.847
SRP173429 SRR8316895Juvenile bud stage 7.645
SRR8316896Juvenile bud stage 13.416
SRR8316897Juvenile bud stage 7.461
SRR8316894Third green stage 9.388
SRR8316900Third green stage 15.563
SRR8316901Third green stage 13.735
SRR8316898Complete white stage 7.296
SRR8316899Complete white stage 33.173
SRR8316903Complete white stage 10.204
SRR8316902Silver flowering stage7.601
SRR8316904Silver flowering stage12.068
SRR8316905Silver flowering stage7.892
SRR8316906Gold flowering stage 7.687
SRR8316907Gold flowering stage 14.748
SRR8316908Gold flowering stage 11.911
SRP132670SRR6706286Control10.420
SRR6706287Light intensity 50%13.076
SRR6706288Light intensity 20%12.959
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.185
CNS0095593Slightly white alabastrum(diploid) 28.930
CNS0095594Slightly white alabastrum(diploid) 311.991
CNS0095595Whole white alabastrum(diploid) 28.581
CNS0095596Whole white alabastrum(diploid) 37.528
CNS0095597Whole white alabastrum(diploid) 410.843
CNS0095598Silvery flower (diploied) 112.423
CNS0095599Silvery flower (diploied) 27.278
CNS0095600Silvery flower (diploied) 38.393
CNS0095601Golden flower (diploid) 19.588
CNS0095602Golden flower (diploid) 28.341
CNS0095603Golden flower (diploid) 38.328
CNS0095604Slightly white alabastrum(tetraploid) 111.542
CNS0095605Slightly white alabastrum(tetraploid) 214.129
CNS0095606Slightly white alabastrum(tetraploid) 317.657
CNS0095607Whole white alabastrum(tetraploid) 112.503
CNS0095608Whole white alabastrum(tetraploid) 210.032
CNS0095609Whole white alabastrum(tetraploid) 311.169
CNS0095610Silvery flower (tetraploid) 111.835
CNS0095611Silvery flower (tetraploid) 216.174
CNS0095612Silvery flower (tetraploid) 37.903
CNS0095613Golden flower (tetraploid) 13.593
CNS0095614Golden flower (tetraploid) 26.018
CNS0095615Golden flower (tetraploid) 34.234
CRA001975CRR073297Stem 121.654
CRR073298Stem 216.333
CRR073299Stem 313.592
CRR073300Leaf 123.629
CRR073301Leaf 223.737
CRR073302Leaf 319.300
CRR073303Juvenile bud 119.360
CRR073304Juvenile bud 27.996
CRR073305Juvenile bud 322.076
CRR073306Third green 11.862
CRR073307Third green 22.415
CRR073308Third green 32.329
CRR073309Second white 13.379
CRR073310Second white 22.499
CRR073311Second white 32.809
CRR073312Silver flowering 10.368
CRR073313Silver flowering 21.894
CRR073314Silver flowering 31.907
CRR073315Gold flowering 115.284
CRR073316Gold flowering 220.047
CRR073317Gold flowering 315.880
CRR073318Tawny withering 120.907
CRR073319Tawny withering 211.702
CRR073320Tawny withering 323.225