Detail information of GWHGAAZE033589


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009376335.10PREDICTED: glucan endo-1,3-beta-glucosidase 6 [Pyrus x bretschneideri]
Swissprottr|Q93Z08|E136_ARATH0Glucan endo-1,3-beta-glucosidase 6 (Precursor)
trEMBLtr|A0A067GDD2|A0A067GDD2_CITSI0Uncharacterized protein {ECO:0000313|EMBL:KDO73371.1}
TAIR10AT5G58090.10O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene29962723002373+
GWHAAZE00000108mRNA29962723002373+
GWHAAZE00000108exon29962722996618+
GWHAAZE00000108exon30011223001928+
GWHAAZE00000108exon30020303002190+
GWHAAZE00000108exon30022703002373+
GWHAAZE00000108CDS29962722996618+
GWHAAZE00000108CDS30011223001928+
GWHAAZE00000108CDS30020303002190+
GWHAAZE00000108CDS30022703002373+
Transcript Sequence

Network for GWHGAAZE033589

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00332.19Glyco_hydro_17283461.80E-70
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19893GN5_6 Metabolic pathways map01100
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE033589.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 305101520253035404550556065Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.182
SRR3591706second leaf12.025
SRR3591707mature leaf4.179
SRR3591708Shoot apex35.640
SRR3591709Stem16.112
SRR3591710White floral bud6.559
SRR3591711White flower2.608
SRR3591712Green floral bud25.148
SRR3591713Yellow flower1.496
SRP173429 SRR8316895Juvenile bud stage 12.523
SRR8316896Juvenile bud stage 14.801
SRR8316897Juvenile bud stage 5.888
SRR8316894Third green stage 7.107
SRR8316900Third green stage 20.297
SRR8316901Third green stage 19.962
SRR8316898Complete white stage 3.251
SRR8316899Complete white stage 27.294
SRR8316903Complete white stage 7.414
SRR8316902Silver flowering stage1.948
SRR8316904Silver flowering stage2.106
SRR8316905Silver flowering stage1.013
SRR8316906Gold flowering stage 2.760
SRR8316907Gold flowering stage 1.833
SRR8316908Gold flowering stage 2.143
SRP132670SRR6706286Control22.186
SRR6706287Light intensity 50%19.719
SRR6706288Light intensity 20%22.218
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.604
CNS0095593Slightly white alabastrum(diploid) 225.465
CNS0095594Slightly white alabastrum(diploid) 318.760
CNS0095595Whole white alabastrum(diploid) 218.297
CNS0095596Whole white alabastrum(diploid) 319.158
CNS0095597Whole white alabastrum(diploid) 413.024
CNS0095598Silvery flower (diploied) 118.015
CNS0095599Silvery flower (diploied) 214.349
CNS0095600Silvery flower (diploied) 38.526
CNS0095601Golden flower (diploid) 114.476
CNS0095602Golden flower (diploid) 210.636
CNS0095603Golden flower (diploid) 311.234
CNS0095604Slightly white alabastrum(tetraploid) 138.150
CNS0095605Slightly white alabastrum(tetraploid) 231.578
CNS0095606Slightly white alabastrum(tetraploid) 359.939
CNS0095607Whole white alabastrum(tetraploid) 129.688
CNS0095608Whole white alabastrum(tetraploid) 218.351
CNS0095609Whole white alabastrum(tetraploid) 329.278
CNS0095610Silvery flower (tetraploid) 16.970
CNS0095611Silvery flower (tetraploid) 28.621
CNS0095612Silvery flower (tetraploid) 39.070
CNS0095613Golden flower (tetraploid) 13.214
CNS0095614Golden flower (tetraploid) 26.422
CNS0095615Golden flower (tetraploid) 34.308
CRA001975CRR073297Stem 134.446
CRR073298Stem 235.800
CRR073299Stem 331.870
CRR073300Leaf 145.660
CRR073301Leaf 246.027
CRR073302Leaf 329.279
CRR073303Juvenile bud 129.438
CRR073304Juvenile bud 217.213
CRR073305Juvenile bud 341.745
CRR073306Third green 13.455
CRR073307Third green 25.632
CRR073308Third green 35.158
CRR073309Second white 11.822
CRR073310Second white 22.238
CRR073311Second white 31.264
CRR073312Silver flowering 11.441
CRR073313Silver flowering 20.848
CRR073314Silver flowering 33.208
CRR073315Gold flowering 17.792
CRR073316Gold flowering 27.318
CRR073317Gold flowering 310.926
CRR073318Tawny withering 120.411
CRR073319Tawny withering 215.573
CRR073320Tawny withering 320.485