Gene detail

Detail information of GWHGAAZE033638

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_008520169.1	3.6324E-150	cytochrome b6 (chloroplast) [Camellia taliensis]
COG	NP_681585.1	1E-134	cytochrome b6
Swissprot	tr\|Q1KXS9\|CYB6_HELAN	2E-150	Cytochrome b6 {ECO:0000255\|HAMAP-Rule:MF_00633}
trEMBL	tr\|T1WXL8\|T1WXL8_9ERIC	1E-150	Cytochrome b6 {ECO:0000256\|HAMAP-Rule:MF_00633}
TAIR10	ATCG00720.1	4E-119	photosynthetic electron transfer B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000106	gene	1407	5165	+
GWHAAZE00000106	mRNA	1407	5165	+
GWHAAZE00000106	exon	1407	1638	+
GWHAAZE00000106	exon	1732	1774	+
GWHAAZE00000106	exon	1879	2149	+
GWHAAZE00000106	exon	2468	2719	+
GWHAAZE00000106	exon	3140	3210	+
GWHAAZE00000106	exon	4502	5165	+
GWHAAZE00000106	CDS	1407	1638	+
GWHAAZE00000106	CDS	1732	1774	+
GWHAAZE00000106	CDS	1879	2149	+
GWHAAZE00000106	CDS	2468	2719	+
GWHAAZE00000106	CDS	3140	3210	+
GWHAAZE00000106	CDS	4502	5165	+

Transcript Sequence
>GWHTAAZE033677 ATGGCTCTGTATGAATTAGCAGTTTTGATCCCTCTGACCCCGTTCTTGATCCAATGTGAGACAGGGTATGTTCGTTATACCATTCATGACTCGTTTAGGAATAACCAATTCATGGGTGGTTGGGGTATCACAGGGGACTATAACGAATCCAGGTATTTGGAGTTACGAAGGTGTGGCCGGGGCACATATTGTGTTTTCTGGCTTGTGCTTCTTGGCAGCTATCTGGCATTGGGAGTGGCGTGCTTTGGTTTTGGTGCATTTCATGTAACAGGCTTGAATAGCCTCTCATCATTGCAGCAGGGGCATTGGGCATATTGGCGGGCCTATTCCATCTTAGCGAAAGTTCGCCCACCCCAACGCCTATACAAAGGATTGCGTATGGGCAATATTGAAACCGTCCTTTCCAGTAGTATTGCTGCTGTCTTTGCAGCTTTTGTTGTTGCCGGAACTATGTGGTATGGTTCAGCAACTACTCCGATCGAATTGTTTGGGCCTACTTCGTTATCAATGGGATCAGGGTACTTTCAGCAAGAGATATACCGAAGGGTAACTGTTGAGTTCTACGGTGGCGAACTCAACGGAGTCAGTTATAGCGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTGGGTGAAATTTTTGAGTTAGATCGTGCTACTTTGAAATCCGATGGTGTTTTTCGTAGCAGTCCGAGAGGTTGGTTTACTTTTGGACATGCTTCATTTGCTTTGCTCTTTTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTTTTGCTGGCTCATTACTCAACTAGTCCCCATGTTCCTCGAATGGATCTCTTAGGTGTTGAGAAGGTTGCCCAAAAGCGGGGGAGTCCCGCCTATCTCAATAAAGTTTATGATTGGTTTGAAGAACGTCTCGAGATTCAGGCAATTGCGGATGATATAACTAGTAAATATGTTCCTCCCCATGTCAACATATTTTATTGTCTAGGAGGAATTACGCTTACTTGTTTTTTGGTACAAGTGGCTACGGGGTTTGCTATGACTTTTTACTATCGTCCGACCGTTACTGACGCTTTTGCTTCTGTTCAATACATAATGACTGAAGCTAATTTTGGTTGGTTAATCCGATCTGTTCATCGATGGTCGGCAAGTATGATGGTTCTAATGATGATCTTACACGTATTTCGCGTGTATCTCACCGGTGGATTTAAAAAACCTCGAGAATTGACTTGGGTTACTGGGGTGGTTCTGGCTGTATTGACCGCATCTTTTGGCGTAACCGGTTATTCCTTACCTTGGGACCAAATTGGTTATTGGGCAGTGAAAATTGTAACAGGTGTCCCTGAAGCTATTCCTGTAATAGGACCTCCTTTGGTAGAATTATTGCGCGGGAGTGCTAGTGTGGGACAATCCACTTTGACTCGGTTTTATAGTTTACACACTTTTGTATTACCACTTCTTACTGCGGTATTTATGTTAATGCACTTTCCGATGATACGTAAACAAGGCATTTCTGGTCCTTTATAG

Network for GWHGAAZE033638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00421.20	PSII	114	184	2.80E-26
PF00421.20	PSII	182	265	3.00E-37
PF00033.20	Cytochrome_B	317	505	6.00E-85

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02635	petB	Metabolic pathways	map01100
K02635	petB	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0009767	biological_process	photosynthetic electron transport chain
GO:0019684	biological_process	photosynthesis, light reaction
GO:0022904	biological_process	respiratory electron transport chain
GO:0009521	cellular_component	photosystem
GO:0016020	cellular_component	membrane
GO:0016168	molecular_function	chlorophyll binding
GO:0009055	molecular_function	electron transfer activity
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.180
	SRR3591706	second leaf	1.159
	SRR3591707	mature leaf	1.170
	SRR3591708	Shoot apex	1.263
	SRR3591709	Stem	0.198
	SRR3591710	White floral bud	0.237
	SRR3591711	White flower	0.146
	SRR3591712	Green floral bud	0.265
	SRR3591713	Yellow flower	0.094
SRP173429	SRR8316895	Juvenile bud stage	7.144
	SRR8316896	Juvenile bud stage	2.553
	SRR8316897	Juvenile bud stage	11.683
	SRR8316894	Third green stage	10.667
	SRR8316900	Third green stage	0.883
	SRR8316901	Third green stage	0.719
	SRR8316898	Complete white stage	3.940
	SRR8316899	Complete white stage	0.200
	SRR8316903	Complete white stage	2.946
	SRR8316902	Silver flowering stage	4.780
	SRR8316904	Silver flowering stage	4.539
	SRR8316905	Silver flowering stage	3.376
	SRR8316906	Gold flowering stage	0.203
	SRR8316907	Gold flowering stage	0.065
	SRR8316908	Gold flowering stage	0.292
SRP132670	SRR6706286	Control	0.145
	SRR6706287	Light intensity 50%	0.167
	SRR6706288	Light intensity 20%	0.141
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.810
	CNS0095593	Slightly white alabastrum(diploid) 2	1.716
	CNS0095594	Slightly white alabastrum(diploid) 3	2.587
	CNS0095595	Whole white alabastrum(diploid) 2	3.613
	CNS0095596	Whole white alabastrum(diploid) 3	2.541
	CNS0095597	Whole white alabastrum(diploid) 4	2.688
	CNS0095598	Silvery flower (diploied) 1	1.817
	CNS0095599	Silvery flower (diploied) 2	1.645
	CNS0095600	Silvery flower (diploied) 3	0.730
	CNS0095601	Golden flower (diploid) 1	1.469
	CNS0095602	Golden flower (diploid) 2	0.602
	CNS0095603	Golden flower (diploid) 3	0.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.911
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.099
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.648
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.123
	CNS0095610	Silvery flower (tetraploid) 1	0.611
	CNS0095611	Silvery flower (tetraploid) 2	0.866
	CNS0095612	Silvery flower (tetraploid) 3	0.915
	CNS0095613	Golden flower (tetraploid) 1	2.671
	CNS0095614	Golden flower (tetraploid) 2	1.174
	CNS0095615	Golden flower (tetraploid) 3	0.878
CRA001975	CRR073297	Stem 1	1.514
	CRR073298	Stem 2	2.388
	CRR073299	Stem 3	0.728
	CRR073300	Leaf 1	0.831
	CRR073301	Leaf 2	0.928
	CRR073302	Leaf 3	0.673
	CRR073303	Juvenile bud 1	0.772
	CRR073304	Juvenile bud 2	0.587
	CRR073305	Juvenile bud 3	2.004
	CRR073306	Third green 1	0.654
	CRR073307	Third green 2	0.395
	CRR073308	Third green 3	0.916
	CRR073309	Second white 1	0.822
	CRR073310	Second white 2	2.014
	CRR073311	Second white 3	4.537
	CRR073312	Silver flowering 1	3.068
	CRR073313	Silver flowering 2	1.087
	CRR073314	Silver flowering 3	1.967
	CRR073315	Gold flowering 1	17.180
	CRR073316	Gold flowering 2	13.718
	CRR073317	Gold flowering 3	23.053
	CRR073318	Tawny withering 1	1.114
	CRR073319	Tawny withering 2	0.934
	CRR073320	Tawny withering 3	1.026