Gene detail

Detail information of GWHGAAZE033650

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD31310.1	NADH-plastoquinone oxidoreductase subunit 7 protein (chloroplast) [Lonicera japonica]
COG	YP_007102317.1	NADH dehydrogenase subunit D
Swissprot	tr\|Q332S1\|NDHH_LACSA	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01358}
trEMBL	tr\|D3WBP4\|D3WBP4_LONJA	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01358}
TAIR10	ATCG01110.1	NAD(P)H dehydrogenase subunit H

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000106	gene	45247	46428	+
GWHAAZE00000106	mRNA	45247	46428	+
GWHAAZE00000106	exon	45247	46428	+
GWHAAZE00000106	CDS	45247	46428	+

Transcript Sequence
>GWHTAAZE033689 ATGACTACGCCAGTTACAAGAAAAGACCTCATGATAGTCAATATGGGTCCTCACCACCCATCAATGCATGGTGTTCTTCGACTCATTGTTACTCTAGATGGAGAAGATGTTATTGACTGTGAGCCAGTATTGGGTTATTTACATAGAGGTATGGAAAAAATTGCGGAAAACCGAACAATTATACAATATTTGCCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTCACCGAAGCAATAACTGTAAATGCACCGGAGCAGTTAGGCAATATTCAAGTACCTAAAAGGGCCAGCTATATCAGAGTCATTATGCTGGAGTTAAGTCGTATAGCTTCGCATTTGTTATGGCTTGGCCCTTTTATGGCAGATATTGGGGCACAGACCCCTTTCTTCTATATTTTTCGAGAAAGAGAATTGATATATGACCTATTCGAAGCTGCCACCGGTATGCGAATGATGCATAATTTTTTTCGTATCGGAGGGGTAGCTGCTGATTTACCTCATGGATGGATAGATAAATGTTTGGATTTTTGCGATTATTTTTTAACAGAGGTTGCTGAATATCAAAATCTTATTACACGCAATCCTATTTTTTTAAAACGAGTTGAAGGAGTAGGCATTATTGGCGGAAAGGAGGCAATAAATTGGGGTTTATCGGGACCAATGCTACGAGCTTCCGGAATACAATGGGATCTTCGTAAAGTTGATCAGTATGAGTGTTACGACGAGTTCGATTGGGAAGTCCAATGGCAAAATGAGGGGGATTCATTAGCTCGTTATTTAGTACGAATCAATGAAATGGCAGAATCCATAAAAATGATTCAACAGGCTCTAGAAGGAATTCCGGGGGGGCCCTATGAGAATTTAGAAATCCGACGTTTTGATCCACTAAGAGATCCGAAATGGAATGATTTTGACTATCGATTTATTAGTAAAAAACCTTCTCCGACTTTTGAATTGTCGAAGCAAGAACTTTATGTGAGAGTTGAAGCCCCAAAAGGAGAATTGGGAATTTTTCTGATAGGGGATAAGAATGTTTTTCCTTGGAGATGGAAAATCCGACCACCGGGTTTTATCAATTTGCAAATTCTTCCTCAGCTAGTTAAAAGAATGAAATTGGCTGATATTATGACGATATTAGGTAGCATAGATATCATTATGGGAGAAGTTGATCGTTAA

Network for GWHGAAZE033650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00346.20	Complex1_49kDa	124	393	1.00E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05579	ndhH	Metabolic pathways	map01100
K05579	ndhH	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
GO:0048038	molecular_function	quinone binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.528
	SRR3591706	second leaf	4.960
	SRR3591707	mature leaf	4.130
	SRR3591708	Shoot apex	3.907
	SRR3591709	Stem	1.487
	SRR3591710	White floral bud	0.440
	SRR3591711	White flower	0.231
	SRR3591712	Green floral bud	0.731
	SRR3591713	Yellow flower	0.661
SRP173429	SRR8316895	Juvenile bud stage	5.970
	SRR8316896	Juvenile bud stage	3.093
	SRR8316897	Juvenile bud stage	9.583
	SRR8316894	Third green stage	11.356
	SRR8316900	Third green stage	2.283
	SRR8316901	Third green stage	1.810
	SRR8316898	Complete white stage	2.088
	SRR8316899	Complete white stage	1.068
	SRR8316903	Complete white stage	2.099
	SRR8316902	Silver flowering stage	3.862
	SRR8316904	Silver flowering stage	2.843
	SRR8316905	Silver flowering stage	3.172
	SRR8316906	Gold flowering stage	1.127
	SRR8316907	Gold flowering stage	1.264
	SRR8316908	Gold flowering stage	1.664
SRP132670	SRR6706286	Control	0.237
	SRR6706287	Light intensity 50%	0.433
	SRR6706288	Light intensity 20%	0.214
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.003
	CNS0095593	Slightly white alabastrum(diploid) 2	4.524
	CNS0095594	Slightly white alabastrum(diploid) 3	3.702
	CNS0095595	Whole white alabastrum(diploid) 2	6.742
	CNS0095596	Whole white alabastrum(diploid) 3	5.735
	CNS0095597	Whole white alabastrum(diploid) 4	6.581
	CNS0095598	Silvery flower (diploied) 1	3.878
	CNS0095599	Silvery flower (diploied) 2	3.969
	CNS0095600	Silvery flower (diploied) 3	3.062
	CNS0095601	Golden flower (diploid) 1	3.466
	CNS0095602	Golden flower (diploid) 2	3.902
	CNS0095603	Golden flower (diploid) 3	3.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.783
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.299
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.435
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.287
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.579
	CNS0095610	Silvery flower (tetraploid) 1	3.489
	CNS0095611	Silvery flower (tetraploid) 2	4.313
	CNS0095612	Silvery flower (tetraploid) 3	2.141
	CNS0095613	Golden flower (tetraploid) 1	3.062
	CNS0095614	Golden flower (tetraploid) 2	2.442
	CNS0095615	Golden flower (tetraploid) 3	2.020
CRA001975	CRR073297	Stem 1	3.190
	CRR073298	Stem 2	4.792
	CRR073299	Stem 3	1.310
	CRR073300	Leaf 1	3.618
	CRR073301	Leaf 2	2.983
	CRR073302	Leaf 3	0.753
	CRR073303	Juvenile bud 1	1.708
	CRR073304	Juvenile bud 2	1.127
	CRR073305	Juvenile bud 3	1.292
	CRR073306	Third green 1	0.741
	CRR073307	Third green 2	0.233
	CRR073308	Third green 3	1.936
	CRR073309	Second white 1	0.814
	CRR073310	Second white 2	2.363
	CRR073311	Second white 3	3.126
	CRR073312	Silver flowering 1	2.056
	CRR073313	Silver flowering 2	0.532
	CRR073314	Silver flowering 3	1.409
	CRR073315	Gold flowering 1	7.987
	CRR073316	Gold flowering 2	14.048
	CRR073317	Gold flowering 3	4.222
	CRR073318	Tawny withering 1	2.454
	CRR073319	Tawny withering 2	2.299
	CRR073320	Tawny withering 3	1.633