Gene detail

Detail information of GWHGAAZE033658

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP33886.1	0	hypothetical protein JCGZ_07457 [Jatropha curcas]
Swissprot	tr\|Q8GZ92\|BRXL4_ARATH	2E-148	Protein Brevis radix-like 4
trEMBL	tr\|A0A067KCD9\|A0A067KCD9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP33886.1}
TAIR10	AT5G20540.1	7E-119	BREVIS RADIX-like 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000107	gene	142013	147619	-
GWHAAZE00000107	mRNA	142013	147619	-
GWHAAZE00000107	exon	147497	147619	-
GWHAAZE00000107	exon	146157	146527	-
GWHAAZE00000107	exon	143228	143363	-
GWHAAZE00000107	exon	142262	142662	-
GWHAAZE00000107	exon	142013	142091	-
GWHAAZE00000107	CDS	147497	147619	-
GWHAAZE00000107	CDS	146157	146527	-
GWHAAZE00000107	CDS	143228	143363	-
GWHAAZE00000107	CDS	142262	142662	-
GWHAAZE00000107	CDS	142013	142091	-

Transcript Sequence
>GWHTAAZE033697 ATGCTTACATGCTTGCCTCGTTCGAAGCATTCCAACAATGAATCACTCGATGATGAACATATCGAAGTAAGCTCCAATGCCACCCCTGCTACTAAACAAGCCATCAGAACTCTCACTTCTCAGATCAAAGACATGGCATTGAAGGCATCAGGGCCATGTACAGGTCCCCCAACTCACCAGAGGCAGAGAAGTCACACCTCGTCGGAATCTCCGTCGGAGAGGTTCCGGTGGTCTCTCCGTCGAAACGGGAGTTCGAATTCCAGATCGGAGGCGGTGAACGGGAGGGTGTGGGGGAAGGAAATGGAGGCGAGGCTGAAGGGTATTTCGAGTGGAGAGGGTACGCTGGCATCGTCGGCTAGTGGCCGCCGGCCGGTGGTTGTGTTAGTGGAGGAAAAGGACCCGCAAGAATGGGTTGCTCAGATAGAGTCTGGTGTTTTAATAACGTTTGTCTCACTTCCACGCGGCGGTAATGATCTTAAGCGAATTCGGTTCAGTCGAGAAATGTTCAACAAATGGCAAGCACAGAGATGGTGGGTAGAGAATTATGACAAAGTAATGGAACTTTACAATGTGCAAAAATTAAACCGTCATGCTTTTCCTCTTCCAACTCCTCCGAGATCCGAAGATGAGAATTTCAAAATTGAGCCCGTGGCAGATAGCCCTGTAACACCCCCTTTAGGTAGTGAACGCCTACCTCGCACATTATACCATCCTACAGGAATGGGAATGAGCTACTCGTCATCAGATTCACTTGATCAACACCATCCCATGCAGTCGCGCTTTAACGACTCTTGCGCTCTCACTACAACTCCAAAGCACTCAAGTATTAGTGGGGCTAAGACAGAAACATCATCGATGGATGCGTCTATCAGAACCAGTTCATCTAGAGACGTAGATTGCTCTGAAGAGTTATCTATTAGCAATGCCAGTGATGTAGAGACGGAATGGGTTGAACAAGATGAACCGGGAGTATACATTACTATCAAAGCTCTGCCAACGGGTGCACGAGAACTCAGACGTGTCAGATTCAGCCGAGAGAAGTTTGGGGAGATACATGCTAGACTTTGGTGGGAAGAGAACCGAGCTCGTGTACATAAACAATACCTCTGA

Network for GWHGAAZE033658

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0096

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13713.7	BRX_N	25	51	3.00E-10
PF08381.12	BRX	135	189	4.40E-26
PF08381.12	BRX	313	368	3.60E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.946
	SRR3591706	second leaf	0.381
	SRR3591707	mature leaf	0.396
	SRR3591708	Shoot apex	0.668
	SRR3591709	Stem	6.821
	SRR3591710	White floral bud	0.527
	SRR3591711	White flower	4.990
	SRR3591712	Green floral bud	0.148
	SRR3591713	Yellow flower	0.796
SRP173429	SRR8316895	Juvenile bud stage	0.216
	SRR8316896	Juvenile bud stage	0.004
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.068
	SRR8316900	Third green stage	0.203
	SRR8316901	Third green stage	0.083
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.126
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.126
	SRR8316904	Silver flowering stage	1.055
	SRR8316905	Silver flowering stage	0.077
	SRR8316906	Gold flowering stage	0.694
	SRR8316907	Gold flowering stage	0.959
	SRR8316908	Gold flowering stage	0.073
SRP132670	SRR6706286	Control	0.101
	SRR6706287	Light intensity 50%	0.085
	SRR6706288	Light intensity 20%	0.056
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.177
	CNS0095593	Slightly white alabastrum(diploid) 2	0.208
	CNS0095594	Slightly white alabastrum(diploid) 3	0.125
	CNS0095595	Whole white alabastrum(diploid) 2	0.569
	CNS0095596	Whole white alabastrum(diploid) 3	0.093
	CNS0095597	Whole white alabastrum(diploid) 4	0.095
	CNS0095598	Silvery flower (diploied) 1	0.570
	CNS0095599	Silvery flower (diploied) 2	0.190
	CNS0095600	Silvery flower (diploied) 3	0.044
	CNS0095601	Golden flower (diploid) 1	0.266
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.228
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.420
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.011
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.491
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.184
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.294
	CNS0095610	Silvery flower (tetraploid) 1	0.690
	CNS0095611	Silvery flower (tetraploid) 2	0.402
	CNS0095612	Silvery flower (tetraploid) 3	0.081
	CNS0095613	Golden flower (tetraploid) 1	0.233
	CNS0095614	Golden flower (tetraploid) 2	0.787
	CNS0095615	Golden flower (tetraploid) 3	0.202
CRA001975	CRR073297	Stem 1	0.050
	CRR073298	Stem 2	0.057
	CRR073299	Stem 3	0.100
	CRR073300	Leaf 1	0.139
	CRR073301	Leaf 2	0.203
	CRR073302	Leaf 3	0.033
	CRR073303	Juvenile bud 1	0.056
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.314
	CRR073306	Third green 1	2.465
	CRR073307	Third green 2	2.491
	CRR073308	Third green 3	3.447
	CRR073309	Second white 1	6.873
	CRR073310	Second white 2	4.179
	CRR073311	Second white 3	18.153
	CRR073312	Silver flowering 1	17.743
	CRR073313	Silver flowering 2	17.748
	CRR073314	Silver flowering 3	15.395
	CRR073315	Gold flowering 1	1.168
	CRR073316	Gold flowering 2	0.961
	CRR073317	Gold flowering 3	0.295
	CRR073318	Tawny withering 1	7.456
	CRR073319	Tawny withering 2	7.433
	CRR073320	Tawny withering 3	13.458