Detail information of GWHGAAZE033718


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIY60712.10rhomboid protein Lonja_RBL13 [Lonicera japonica]
COGYP_003955000.10.0000006rhomboid family protein
Swissprottr|Q8RXW0|Y3761_ARATH0.000000007Uncharacterized protein At3g17611
trEMBLtr|A5BJP0|A5BJP0_VITVI2E-175Putative uncharacterized protein {ECO:0000313|EMBL:CAN67998.1}
TAIR10AT3G59520.15E-126RHOMBOID-like protein 13

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000122gene539853540659-
GWHAAZE00000122mRNA539853540659-
GWHAAZE00000122exon539853540659-
GWHAAZE00000122CDS539853540659-
Transcript Sequence

Network for GWHGAAZE033718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0228


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01694.23Rhomboid482017.90E-25
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane
GO:0004252molecular_functionserine-type endopeptidase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE033718.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.430
SRR3591706second leaf0.501
SRR3591707mature leaf0.674
SRR3591708Shoot apex0.868
SRR3591709Stem1.633
SRR3591710White floral bud0.792
SRR3591711White flower0.839
SRR3591712Green floral bud0.998
SRR3591713Yellow flower0.860
SRP173429 SRR8316895Juvenile bud stage 4.476
SRR8316896Juvenile bud stage 6.859
SRR8316897Juvenile bud stage 10.750
SRR8316894Third green stage 3.332
SRR8316900Third green stage 11.043
SRR8316901Third green stage 10.388
SRR8316898Complete white stage 8.173
SRR8316899Complete white stage 15.788
SRR8316903Complete white stage 13.355
SRR8316902Silver flowering stage7.464
SRR8316904Silver flowering stage11.391
SRR8316905Silver flowering stage5.676
SRR8316906Gold flowering stage 19.375
SRR8316907Gold flowering stage 15.677
SRR8316908Gold flowering stage 20.408
SRP132670SRR6706286Control1.710
SRR6706287Light intensity 50%2.097
SRR6706288Light intensity 20%2.583
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.015
CNS0095593Slightly white alabastrum(diploid) 25.882
CNS0095594Slightly white alabastrum(diploid) 35.397
CNS0095595Whole white alabastrum(diploid) 26.401
CNS0095596Whole white alabastrum(diploid) 38.101
CNS0095597Whole white alabastrum(diploid) 46.799
CNS0095598Silvery flower (diploied) 19.056
CNS0095599Silvery flower (diploied) 26.723
CNS0095600Silvery flower (diploied) 316.994
CNS0095601Golden flower (diploid) 19.820
CNS0095602Golden flower (diploid) 217.182
CNS0095603Golden flower (diploid) 313.949
CNS0095604Slightly white alabastrum(tetraploid) 117.090
CNS0095605Slightly white alabastrum(tetraploid) 217.911
CNS0095606Slightly white alabastrum(tetraploid) 324.772
CNS0095607Whole white alabastrum(tetraploid) 116.804
CNS0095608Whole white alabastrum(tetraploid) 217.022
CNS0095609Whole white alabastrum(tetraploid) 321.382
CNS0095610Silvery flower (tetraploid) 124.659
CNS0095611Silvery flower (tetraploid) 219.475
CNS0095612Silvery flower (tetraploid) 330.944
CNS0095613Golden flower (tetraploid) 117.487
CNS0095614Golden flower (tetraploid) 220.819
CNS0095615Golden flower (tetraploid) 326.401
CRA001975CRR073297Stem 15.821
CRR073298Stem 24.423
CRR073299Stem 35.932
CRR073300Leaf 15.337
CRR073301Leaf 26.284
CRR073302Leaf 34.596
CRR073303Juvenile bud 17.430
CRR073304Juvenile bud 28.624
CRR073305Juvenile bud 310.018
CRR073306Third green 16.873
CRR073307Third green 26.354
CRR073308Third green 35.795
CRR073309Second white 18.036
CRR073310Second white 27.475
CRR073311Second white 34.939
CRR073312Silver flowering 111.795
CRR073313Silver flowering 213.034
CRR073314Silver flowering 34.544
CRR073315Gold flowering 13.600
CRR073316Gold flowering 24.630
CRR073317Gold flowering 34.252
CRR073318Tawny withering 14.436
CRR073319Tawny withering 27.203
CRR073320Tawny withering 36.066