Detail information of GWHGAAZE033749


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP17261.11.20082E-59unnamed protein product [Coffea canephora]
Swissprottr|Q9SU30|CPR30_ARATH4E-30F-box protein CPR30
trEMBLtr|A0A068V9F9|A0A068V9F9_COFCA4E-60Coffea canephora DH200=94 genomic scaffold, scaffold_150 {ECO:0000313|EMBL:CDP17261.1}
TAIR10AT4G12560.22E-26F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000134gene4462845469+
GWHAAZE00000134mRNA4462845469+
GWHAAZE00000134exon4462844678+
GWHAAZE00000134exon4489145469+
GWHAAZE00000134CDS4462844678+
GWHAAZE00000134CDS4489145469+
Transcript Sequence

Network for GWHGAAZE033749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 2.747
SRR8316896Juvenile bud stage 4.732
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 1.631
SRR8316900Third green stage 4.085
SRR8316901Third green stage 2.936
SRR8316898Complete white stage 2.059
SRR8316899Complete white stage 4.683
SRR8316903Complete white stage 1.987
SRR8316902Silver flowering stage1.118
SRR8316904Silver flowering stage2.672
SRR8316905Silver flowering stage1.080
SRR8316906Gold flowering stage 2.680
SRR8316907Gold flowering stage 2.450
SRR8316908Gold flowering stage 0.236
SRP132670SRR6706286Control2.333
SRR6706287Light intensity 50%2.380
SRR6706288Light intensity 20%3.073
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.116
CNS0095593Slightly white alabastrum(diploid) 22.817
CNS0095594Slightly white alabastrum(diploid) 32.406
CNS0095595Whole white alabastrum(diploid) 23.653
CNS0095596Whole white alabastrum(diploid) 33.168
CNS0095597Whole white alabastrum(diploid) 44.317
CNS0095598Silvery flower (diploied) 12.800
CNS0095599Silvery flower (diploied) 21.301
CNS0095600Silvery flower (diploied) 33.438
CNS0095601Golden flower (diploid) 13.281
CNS0095602Golden flower (diploid) 22.724
CNS0095603Golden flower (diploid) 31.977
CNS0095604Slightly white alabastrum(tetraploid) 10.072
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.000
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.014
CNS0095612Silvery flower (tetraploid) 30.000
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 13.179
CRR073298Stem 22.001
CRR073299Stem 31.223
CRR073300Leaf 13.567
CRR073301Leaf 23.750
CRR073302Leaf 33.172
CRR073303Juvenile bud 12.141
CRR073304Juvenile bud 21.412
CRR073305Juvenile bud 32.749
CRR073306Third green 10.873
CRR073307Third green 20.642
CRR073308Third green 30.634
CRR073309Second white 10.274
CRR073310Second white 21.937
CRR073311Second white 32.376
CRR073312Silver flowering 10.545
CRR073313Silver flowering 20.258
CRR073314Silver flowering 30.673
CRR073315Gold flowering 10.376
CRR073316Gold flowering 20.807
CRR073317Gold flowering 30.964
CRR073318Tawny withering 13.183
CRR073319Tawny withering 22.310
CRR073320Tawny withering 32.578