Gene detail

Detail information of GWHGAAZE033780

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007013011.1	0	Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
COG	YP_003404589.1	6E-70	pectinesterase
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	0	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|A0A061GL86\|A0A061GL86_THECC	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT5G19730.1	6E-161	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000136	gene	81821	86654	+
GWHAAZE00000136	mRNA	81821	86654	+
GWHAAZE00000136	exon	81821	82020	+
GWHAAZE00000136	exon	82624	82813	+
GWHAAZE00000136	exon	83407	83613	+
GWHAAZE00000136	exon	85019	85254	+
GWHAAZE00000136	exon	86507	86654	+
GWHAAZE00000136	CDS	81821	82020	+
GWHAAZE00000136	CDS	82624	82813	+
GWHAAZE00000136	CDS	83407	83613	+
GWHAAZE00000136	CDS	85019	85254	+
GWHAAZE00000136	CDS	86507	86654	+

Transcript Sequence
>GWHTAAZE033820 ATGAAGTGGGTCAAATTTGTTGGTACACTTAAACACTCCCTTTTTAACACAGCCAAGAACAAGCTTTTTCCTTCTTATACTCTCACCGTCGATAAGAATCCGGAGACCGGAGACTTCACGTCGATTCAAGATGCAATTGATTCTCTCCCTTTTATTAATCTTGTGAGAGTTGTGATTCAAGTTCATGCTGGCGTTTATGAGGAGAAGGTAAACATATCATCATTGAAATCATTCATAACAATAGAAGGAGAAGGAGCAGAGAAGACAGTGGTTCAATGGGGAGATACAGCTCAAACAATTGGGCCAAATGGGAAGCCTCTTGGTACCTTTGGTTCTGCCACTTTTGCTGTCAATTCCCCATATTTCATAGCCAAGAACATCACTTTTAAGAATACATTTCCAGTACCAGCACCGGGAGCTATTGGAAAGCAAGCAGTGGCATTTAGAATATCAGGCGATAATGCAGTTTTTCTAGGCTGCAGATTCCTGGGTGCACAAGACACCCTCTATGACCACTCGGGCAGGCATTATTACAAGGATTCCTACATTGAAGGCTCTGTCGACTTTATATTCGGCAATGCTCTTTCTCTATTTGAGGGGTGTGAGTTGCATGCAGTAGCACAAGTAATAGGTGCAGTTACAGCACAAGGGAGGAGCAGCAACATAGAGGACACTGGATTCTCCTTTCTCAAGTGTAAAGTGACTGGGTCTGGGGCTCTCTACCTTGGGAGGGCATGGGGTCCCTTTTCTAGGGTAGTCTTTGCCTATACTTATATGGACAACATTATCATCCCCAAAGGCTGGTATAATTGGGGTGACCCTAACCGTGAAATGACAGTGTTTTATGGGCAATACAAGTGTAGTGGAGCAGGAGCAAGTTTTGCAGGAAGAGTGTCATGGTCAAGAGAACTCACTGATGAAGAAGCCCAGCCTTTTCTTTCCCTTAGCTTTGTTGATGGCTCTGAATGGATTAAACTTTAG

Network for GWHGAAZE033780

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.20	Pectinesterase	35	320	2.40E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.717
	SRR3591706	second leaf	13.523
	SRR3591707	mature leaf	0.571
	SRR3591708	Shoot apex	6.239
	SRR3591709	Stem	1.044
	SRR3591710	White floral bud	6.002
	SRR3591711	White flower	5.346
	SRR3591712	Green floral bud	5.053
	SRR3591713	Yellow flower	1.551
SRP173429	SRR8316895	Juvenile bud stage	0.887
	SRR8316896	Juvenile bud stage	1.226
	SRR8316897	Juvenile bud stage	2.589
	SRR8316894	Third green stage	1.663
	SRR8316900	Third green stage	3.532
	SRR8316901	Third green stage	2.844
	SRR8316898	Complete white stage	2.992
	SRR8316899	Complete white stage	4.267
	SRR8316903	Complete white stage	4.188
	SRR8316902	Silver flowering stage	3.425
	SRR8316904	Silver flowering stage	3.330
	SRR8316905	Silver flowering stage	0.879
	SRR8316906	Gold flowering stage	4.840
	SRR8316907	Gold flowering stage	3.583
	SRR8316908	Gold flowering stage	26.037
SRP132670	SRR6706286	Control	3.391
	SRR6706287	Light intensity 50%	3.475
	SRR6706288	Light intensity 20%	2.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.017
	CNS0095593	Slightly white alabastrum(diploid) 2	1.928
	CNS0095594	Slightly white alabastrum(diploid) 3	1.894
	CNS0095595	Whole white alabastrum(diploid) 2	1.316
	CNS0095596	Whole white alabastrum(diploid) 3	1.382
	CNS0095597	Whole white alabastrum(diploid) 4	2.028
	CNS0095598	Silvery flower (diploied) 1	2.247
	CNS0095599	Silvery flower (diploied) 2	1.969
	CNS0095600	Silvery flower (diploied) 3	4.061
	CNS0095601	Golden flower (diploid) 1	1.667
	CNS0095602	Golden flower (diploid) 2	2.136
	CNS0095603	Golden flower (diploid) 3	2.215
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.737
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.951
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.727
	CNS0095610	Silvery flower (tetraploid) 1	12.898
	CNS0095611	Silvery flower (tetraploid) 2	7.900
	CNS0095612	Silvery flower (tetraploid) 3	6.475
	CNS0095613	Golden flower (tetraploid) 1	3.707
	CNS0095614	Golden flower (tetraploid) 2	4.476
	CNS0095615	Golden flower (tetraploid) 3	3.767
CRA001975	CRR073297	Stem 1	1.615
	CRR073298	Stem 2	2.504
	CRR073299	Stem 3	1.022
	CRR073300	Leaf 1	2.921
	CRR073301	Leaf 2	4.133
	CRR073302	Leaf 3	2.094
	CRR073303	Juvenile bud 1	2.635
	CRR073304	Juvenile bud 2	1.632
	CRR073305	Juvenile bud 3	1.788
	CRR073306	Third green 1	0.098
	CRR073307	Third green 2	0.555
	CRR073308	Third green 3	0.515
	CRR073309	Second white 1	0.255
	CRR073310	Second white 2	0.571
	CRR073311	Second white 3	0.123
	CRR073312	Silver flowering 1	0.176
	CRR073313	Silver flowering 2	0.062
	CRR073314	Silver flowering 3	0.584
	CRR073315	Gold flowering 1	0.869
	CRR073316	Gold flowering 2	1.839
	CRR073317	Gold flowering 3	0.671
	CRR073318	Tawny withering 1	4.704
	CRR073319	Tawny withering 2	3.233
	CRR073320	Tawny withering 3	4.640