Gene detail

Detail information of GWHGAAZE033854

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009772862.1	PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Nicotiana sylvestris]
COG	YP_001867499.1	dihydrolipoamide dehydrogenase
Swissprot	tr\|A8MS68\|PLPD1_ARATH	Dihydrolipoyl dehydrogenase 1, chloroplastic (Precursor)
trEMBL	tr\|M0ZSL5\|M0ZSL5_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400007182}
TAIR10	AT3G16950.1	lipoamide dehydrogenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000141	gene	1272234	1281820	+
GWHAAZE00000141	mRNA	1272234	1281820	+
GWHAAZE00000141	exon	1272234	1272244	+
GWHAAZE00000141	exon	1272528	1272813	+
GWHAAZE00000141	exon	1274173	1274319	+
GWHAAZE00000141	exon	1275579	1275713	+
GWHAAZE00000141	exon	1275855	1275972	+
GWHAAZE00000141	exon	1276549	1276673	+
GWHAAZE00000141	exon	1277377	1277502	+
GWHAAZE00000141	exon	1277592	1277672	+
GWHAAZE00000141	exon	1278342	1278404	+
GWHAAZE00000141	exon	1278512	1278586	+
GWHAAZE00000141	exon	1279658	1279736	+
GWHAAZE00000141	exon	1279824	1279924	+
GWHAAZE00000141	exon	1280012	1280050	+
GWHAAZE00000141	exon	1280401	1280514	+
GWHAAZE00000141	exon	1280987	1281058	+
GWHAAZE00000141	exon	1281767	1281820	+
GWHAAZE00000141	CDS	1272234	1272244	+
GWHAAZE00000141	CDS	1272528	1272813	+
GWHAAZE00000141	CDS	1274173	1274319	+
GWHAAZE00000141	CDS	1275579	1275713	+
GWHAAZE00000141	CDS	1275855	1275972	+
GWHAAZE00000141	CDS	1276549	1276673	+
GWHAAZE00000141	CDS	1277377	1277502	+
GWHAAZE00000141	CDS	1277592	1277672	+
GWHAAZE00000141	CDS	1278342	1278404	+
GWHAAZE00000141	CDS	1278512	1278586	+
GWHAAZE00000141	CDS	1279658	1279736	+
GWHAAZE00000141	CDS	1279824	1279924	+
GWHAAZE00000141	CDS	1280012	1280050	+
GWHAAZE00000141	CDS	1280401	1280514	+
GWHAAZE00000141	CDS	1280987	1281058	+
GWHAAZE00000141	CDS	1281767	1281820	+

Transcript Sequence
>GWHTAAZE033894 ATGTGGGACCAATCCGACTGCGCCGACCTCTTCTCCTCGGGCGGCACCTCAATCACGCCGCCGAGGTCTCTCCGGTTCTGCGGTCTAAGAAGGGAAGTATTTGGAGGAGTTAATTGGTCTTTGAGGAGCTCAACTCGATTCGTTGCTTCGTCTAAGCAGTTGCGATCGGCGAAGAAAGTGTCGGCCTCGCTGTCGAATGGGAATGGAAGTAGTCCGTCGAAGGAATTCGATTACGATCTGGTGATTATTGGAGCTGGTGTTGGTGGTCATGGTGCTGCCCTTCATGCCGTTGAGAAGGGCTTGAAAACTGCCATCATAGAGGGGGATGTAGTTGGGGGAACATGTGTGAATCGGGGTTGTGTCCCTTCCAAAGCTCTTCTTGCTGTAAGTGGACGGATGAGGGAACTTCAGAATGAACTCCATATGAAGTCTTTTGGTTTACAGGTTGCAGCTGCTGGGTATGACAGACAGGGAGTTGCCGACCATGCAAATAATCTTGCCTCCAAAATTAGAAATAATTTAACCAATTCAATGAAAGCACTTGGTGTTGATATATTAACAGGCGTTGGTACAATTTTGGGTCCACAAAAGGTCAAGTATGGAAAAGTTGGGTTACCTGACACAGTAATTACAGCAAAAGACATAATCATTGCTACCGGTTCCACACCGCTTGTGCCCAAGGGAATTGAAGTTGATGGTAAGACTGTAATAACCAGTGATCACGCGCTAAAGTTGGAATTTGTTCCCGAATGGATAGCTATCGTAGGAAGTGGTTACATTGGTCTTGAATTCAGTGATGTATATACAGCACTTGGCTGTGAGGTTACGTTTATTGAAGCTTTAGATCAGTTAATGCCTGGTTTTGATCCTGAGATTGGGAAATTGGCTCAGCGTGTCCTCATCAATCCTCGAAAAATTGATTATCATACTGGTGTATTTGCGAGCAAGATTACTCCCGCAAAGGATGGGAAACCTGTACAAATTGAGCTTATTGATGCCAAGACAAAGGAACCAAAGGATACTCTAGAGGTAGATGCTGCCCTCATTGCAACCGGAAGGGCCCCATTCACAAAAGGGCTTGGATTGGAGAATATCAATGTAGAAACTCAACGTGGATTTGTTCCTGTTGATAATCGCATGCAAGTACTTGATGCAGAGGGAAAAGTGGTCCCTCACGTGTATTGCATTGGAGATGCAAATGGGAAAATGATGCTTGCTCATGCAGCTAGTGCACAAGGAATTTCTGTTGTTGAGAAAGTTACGGGGAAAGACCACGTGCTGAATCATCTGAGCATCCCAGCAGCATGTTTCACCCACCCCGAAATCAGTATGGTTGGATTAACTGAGCCTCAAGCAAGAGAAAAAGGTGAGAAGGAGGGATTTGAATTGATTTACAGACCTGACAATGGGGAAATCCTTGGAGTTCATATTTTCGGGTTGCATGCAGCCGACCTCATACATGAAGCATCCAATGCAATAGCTTTGGGCACTCGTATACAGGACTTAAAATTTGCTGTCCATGCACATCCCACGTTGTCTGAAGTGCTTGATGAACTATTCAAATCAGCCAAGGTTAAAGCTAGCGCTTCAACACCACTTAGTGAGCCGATTCCCGCCATGAAGTAA

Network for GWHGAAZE033854

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	78	413	2.40E-58
PF02852.23	Pyr_redox_dim	462	518	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00382	DLD, lpd, pdhD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Glycolysis / Gluconeogenesis	map00010
		Citrate cycle	map00020
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Glycine, serine and threonine metabolism	map00260
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Tryptophan metabolism	map00380

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0045454	biological_process	cell redox homeostasis
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0016668	molecular_function	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0009055	molecular_function	electron transfer activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.785
	SRR3591706	second leaf	27.794
	SRR3591707	mature leaf	4.103
	SRR3591708	Shoot apex	35.572
	SRR3591709	Stem	5.680
	SRR3591710	White floral bud	14.407
	SRR3591711	White flower	6.438
	SRR3591712	Green floral bud	38.389
	SRR3591713	Yellow flower	4.776
SRP173429	SRR8316895	Juvenile bud stage	14.601
	SRR8316896	Juvenile bud stage	27.268
	SRR8316897	Juvenile bud stage	3.472
	SRR8316894	Third green stage	8.795
	SRR8316900	Third green stage	34.679
	SRR8316901	Third green stage	27.647
	SRR8316898	Complete white stage	3.947
	SRR8316899	Complete white stage	14.588
	SRR8316903	Complete white stage	4.231
	SRR8316902	Silver flowering stage	2.449
	SRR8316904	Silver flowering stage	2.693
	SRR8316905	Silver flowering stage	0.694
	SRR8316906	Gold flowering stage	2.085
	SRR8316907	Gold flowering stage	2.782
	SRR8316908	Gold flowering stage	1.588
SRP132670	SRR6706286	Control	26.979
	SRR6706287	Light intensity 50%	30.542
	SRR6706288	Light intensity 20%	37.482
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.454
	CNS0095593	Slightly white alabastrum(diploid) 2	11.122
	CNS0095594	Slightly white alabastrum(diploid) 3	16.238
	CNS0095595	Whole white alabastrum(diploid) 2	11.193
	CNS0095596	Whole white alabastrum(diploid) 3	14.173
	CNS0095597	Whole white alabastrum(diploid) 4	10.859
	CNS0095598	Silvery flower (diploied) 1	2.285
	CNS0095599	Silvery flower (diploied) 2	4.571
	CNS0095600	Silvery flower (diploied) 3	2.163
	CNS0095601	Golden flower (diploid) 1	1.732
	CNS0095602	Golden flower (diploid) 2	1.839
	CNS0095603	Golden flower (diploid) 3	1.323
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.630
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.985
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.441
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.653
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.333
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.063
	CNS0095610	Silvery flower (tetraploid) 1	3.417
	CNS0095611	Silvery flower (tetraploid) 2	1.991
	CNS0095612	Silvery flower (tetraploid) 3	3.609
	CNS0095613	Golden flower (tetraploid) 1	1.347
	CNS0095614	Golden flower (tetraploid) 2	1.387
	CNS0095615	Golden flower (tetraploid) 3	0.150
CRA001975	CRR073297	Stem 1	29.086
	CRR073298	Stem 2	25.493
	CRR073299	Stem 3	24.131
	CRR073300	Leaf 1	36.913
	CRR073301	Leaf 2	33.684
	CRR073302	Leaf 3	36.254
	CRR073303	Juvenile bud 1	32.849
	CRR073304	Juvenile bud 2	28.610
	CRR073305	Juvenile bud 3	28.933
	CRR073306	Third green 1	3.790
	CRR073307	Third green 2	1.453
	CRR073308	Third green 3	2.238
	CRR073309	Second white 1	2.289
	CRR073310	Second white 2	0.800
	CRR073311	Second white 3	0.277
	CRR073312	Silver flowering 1	0.471
	CRR073313	Silver flowering 2	1.755
	CRR073314	Silver flowering 3	1.800
	CRR073315	Gold flowering 1	7.446
	CRR073316	Gold flowering 2	7.413
	CRR073317	Gold flowering 3	8.798
	CRR073318	Tawny withering 1	15.926
	CRR073319	Tawny withering 2	9.044
	CRR073320	Tawny withering 3	21.245