Detail information of GWHGAAZE033892


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011083027.10PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor SLU7 [Sesamum indicum]
Swissprottr|Q9SHY8|SLU7A_ARATH0Pre-mRNA-splicing factor SLU7-A
trEMBLtr|M1ANM6|M1ANM6_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400026716}
TAIR10AT1G65660.12E-137Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000145gene390359393344-
GWHAAZE00000145mRNA390359393344-
GWHAAZE00000145exon390359390431-
GWHAAZE00000145exon390551390765-
GWHAAZE00000145exon392144392268-
GWHAAZE00000145exon392345393344-
GWHAAZE00000145CDS392345393344-
GWHAAZE00000145CDS392144392268-
GWHAAZE00000145CDS390551390765-
GWHAAZE00000145CDS390359390431-
Transcript Sequence

Network for GWHGAAZE033892

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0040


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11708.9Slu7623292.20E-85
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.579
SRR3591706second leaf0.825
SRR3591707mature leaf1.232
SRR3591708Shoot apex0.934
SRR3591709Stem2.092
SRR3591710White floral bud1.514
SRR3591711White flower1.075
SRR3591712Green floral bud0.995
SRR3591713Yellow flower0.323
SRP173429 SRR8316895Juvenile bud stage 4.653
SRR8316896Juvenile bud stage 4.610
SRR8316897Juvenile bud stage 5.546
SRR8316894Third green stage 3.452
SRR8316900Third green stage 4.278
SRR8316901Third green stage 4.431
SRR8316898Complete white stage 2.339
SRR8316899Complete white stage 4.975
SRR8316903Complete white stage 3.609
SRR8316902Silver flowering stage1.286
SRR8316904Silver flowering stage2.788
SRR8316905Silver flowering stage1.185
SRR8316906Gold flowering stage 3.303
SRR8316907Gold flowering stage 3.458
SRR8316908Gold flowering stage 4.092
SRP132670SRR6706286Control6.586
SRR6706287Light intensity 50%7.029
SRR6706288Light intensity 20%7.682
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.413
CNS0095593Slightly white alabastrum(diploid) 21.766
CNS0095594Slightly white alabastrum(diploid) 32.205
CNS0095595Whole white alabastrum(diploid) 22.281
CNS0095596Whole white alabastrum(diploid) 31.495
CNS0095597Whole white alabastrum(diploid) 42.018
CNS0095598Silvery flower (diploied) 13.433
CNS0095599Silvery flower (diploied) 21.695
CNS0095600Silvery flower (diploied) 31.231
CNS0095601Golden flower (diploid) 11.640
CNS0095602Golden flower (diploid) 21.638
CNS0095603Golden flower (diploid) 32.122
CNS0095604Slightly white alabastrum(tetraploid) 10.559
CNS0095605Slightly white alabastrum(tetraploid) 20.398
CNS0095606Slightly white alabastrum(tetraploid) 31.367
CNS0095607Whole white alabastrum(tetraploid) 10.488
CNS0095608Whole white alabastrum(tetraploid) 20.247
CNS0095609Whole white alabastrum(tetraploid) 30.528
CNS0095610Silvery flower (tetraploid) 10.962
CNS0095611Silvery flower (tetraploid) 21.134
CNS0095612Silvery flower (tetraploid) 31.893
CNS0095613Golden flower (tetraploid) 10.438
CNS0095614Golden flower (tetraploid) 20.644
CNS0095615Golden flower (tetraploid) 30.829
CRA001975CRR073297Stem 17.996
CRR073298Stem 27.622
CRR073299Stem 31.331
CRR073300Leaf 17.823
CRR073301Leaf 27.253
CRR073302Leaf 30.912
CRR073303Juvenile bud 10.952
CRR073304Juvenile bud 20.770
CRR073305Juvenile bud 30.937
CRR073306Third green 10.609
CRR073307Third green 20.465
CRR073308Third green 30.258
CRR073309Second white 10.403
CRR073310Second white 20.430
CRR073311Second white 30.209
CRR073312Silver flowering 10.065
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.223
CRR073315Gold flowering 10.204
CRR073316Gold flowering 20.901
CRR073317Gold flowering 30.428
CRR073318Tawny withering 10.531
CRR073319Tawny withering 20.704
CRR073320Tawny withering 30.589