Detail information of GWHGAAZE033902


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004304927.10PREDICTED: isopenicillin N epimerase-like [Fragaria vesca subsp. vesca]
COGYP_007101293.19E-56Isopenicillin-N epimerase
Swissprottr|Q9LGZ2|LCYD1_ORYSJ0Putative L-cysteine desulfhydrase 1
trEMBLtr|I1JR16|I1JR16_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38740.2}
TAIR10AT5G26600.27E-179Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000145gene544764546113-
GWHAAZE00000145mRNA544764546113-
GWHAAZE00000145exon544764546113-
GWHAAZE00000145CDS544764546113-
Transcript Sequence

Network for GWHGAAZE033902

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.20Aminotran_5913592.70E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K22207LCD Metabolic pathways map01100
Cysteine and methionine metabolismmap00270

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.781
SRR3591706second leaf29.167
SRR3591707mature leaf32.987
SRR3591708Shoot apex46.985
SRR3591709Stem35.583
SRR3591710White floral bud37.725
SRR3591711White flower41.641
SRR3591712Green floral bud38.571
SRR3591713Yellow flower36.605
SRP173429 SRR8316895Juvenile bud stage 10.103
SRR8316896Juvenile bud stage 16.413
SRR8316897Juvenile bud stage 2.514
SRR8316894Third green stage 6.492
SRR8316900Third green stage 20.298
SRR8316901Third green stage 16.023
SRR8316898Complete white stage 6.139
SRR8316899Complete white stage 20.007
SRR8316903Complete white stage 15.984
SRR8316902Silver flowering stage7.873
SRR8316904Silver flowering stage12.899
SRR8316905Silver flowering stage7.533
SRR8316906Gold flowering stage 18.106
SRR8316907Gold flowering stage 14.181
SRR8316908Gold flowering stage 9.184
SRP132670SRR6706286Control15.429
SRR6706287Light intensity 50%12.862
SRR6706288Light intensity 20%13.310
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.918
CNS0095593Slightly white alabastrum(diploid) 26.867
CNS0095594Slightly white alabastrum(diploid) 38.950
CNS0095595Whole white alabastrum(diploid) 27.628
CNS0095596Whole white alabastrum(diploid) 310.253
CNS0095597Whole white alabastrum(diploid) 45.567
CNS0095598Silvery flower (diploied) 19.172
CNS0095599Silvery flower (diploied) 26.485
CNS0095600Silvery flower (diploied) 318.318
CNS0095601Golden flower (diploid) 110.909
CNS0095602Golden flower (diploid) 223.595
CNS0095603Golden flower (diploid) 320.331
CNS0095604Slightly white alabastrum(tetraploid) 115.918
CNS0095605Slightly white alabastrum(tetraploid) 211.738
CNS0095606Slightly white alabastrum(tetraploid) 326.062
CNS0095607Whole white alabastrum(tetraploid) 111.506
CNS0095608Whole white alabastrum(tetraploid) 29.249
CNS0095609Whole white alabastrum(tetraploid) 320.004
CNS0095610Silvery flower (tetraploid) 123.519
CNS0095611Silvery flower (tetraploid) 223.891
CNS0095612Silvery flower (tetraploid) 317.509
CNS0095613Golden flower (tetraploid) 113.473
CNS0095614Golden flower (tetraploid) 225.418
CNS0095615Golden flower (tetraploid) 322.444
CRA001975CRR073297Stem 121.306
CRR073298Stem 220.285
CRR073299Stem 320.423
CRR073300Leaf 120.197
CRR073301Leaf 217.642
CRR073302Leaf 315.275
CRR073303Juvenile bud 115.073
CRR073304Juvenile bud 214.924
CRR073305Juvenile bud 317.962
CRR073306Third green 112.834
CRR073307Third green 28.431
CRR073308Third green 311.575
CRR073309Second white 118.950
CRR073310Second white 218.392
CRR073311Second white 316.614
CRR073312Silver flowering 118.124
CRR073313Silver flowering 227.533
CRR073314Silver flowering 319.660
CRR073315Gold flowering 14.339
CRR073316Gold flowering 27.388
CRR073317Gold flowering 35.432
CRR073318Tawny withering 114.035
CRR073319Tawny withering 26.888
CRR073320Tawny withering 312.173