Gene detail

Detail information of GWHGAAZE033922

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027013.1	0	Non-intrinsic ABC protein 9 [Theobroma cacao]
COG	YP_001505702.1	4E-20	ABC transporter-like protein
Swissprot	tr\|Q9LZ98\|AB20I_ARATH	0	ABC transporter I family member 20
trEMBL	tr\|A0A061ER40\|A0A061ER40_THECC	0	Non-intrinsic ABC protein 9 {ECO:0000313\|EMBL:EOY07515.1}
TAIR10	AT5G02270.1	5E-144	non-intrinsic ABC protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1056078	1059626	-
GWHAAZE00000145	mRNA	1056078	1059626	-
GWHAAZE00000145	exon	1056078	1056305	-
GWHAAZE00000145	exon	1057018	1057095	-
GWHAAZE00000145	exon	1057186	1057338	-
GWHAAZE00000145	exon	1057436	1057531	-
GWHAAZE00000145	exon	1057917	1058036	-
GWHAAZE00000145	exon	1058527	1058660	-
GWHAAZE00000145	exon	1059443	1059626	-
GWHAAZE00000145	CDS	1059443	1059626	-
GWHAAZE00000145	CDS	1058527	1058660	-
GWHAAZE00000145	CDS	1057917	1058036	-
GWHAAZE00000145	CDS	1057436	1057531	-
GWHAAZE00000145	CDS	1057186	1057338	-
GWHAAZE00000145	CDS	1057018	1057095	-
GWHAAZE00000145	CDS	1056078	1056305	-

Transcript Sequence
>GWHTAAZE033962 ATGTATTCAATTATGGCGGTGAAGGAGGAGAATTCGACACCGTTGGTGGAGATCAAGAAGCTGAAATTCACCTACCCGGGGATCGACGGACATCCGCCGCCTGGATCCACACCTCTCATCGACGATTTCTCTCTCACTCTCGATGCCGGCAGTCGCTGCCTTCTCGTCGGATCTAATGGCGCTGGGAAAACTACAATTCTGAAGATACTGGGAGGGAAGCATATGGTGGATCCCGAGATGGTACGCGTGCTTGGGAGATCAGCCTTTCATGATACTGGTTTGACATCTTCCGGTGACCTCTGTTATCTTGGAGGAGAGTGGAGGCGAGAAGTTGCCTTTGCCGGGTTTGAGGTTGCTATACAAATGGATATTTCTGCTGAGAAAATGATATGTGGGGTATCGGGGATTGATCCTCAAAGACGAGCTGAACTAATTAAGGTTTTAGATGTTGATTTATCGTGGAGAATGCACAAGGTATCTGACGGTCAGAGAAGAAGAGTGCAAATATGTATGGGTCTCCTAAAGCCATTCAAGGTTCTTCTTCTTGATGAGATTACGGTTGACCTAGATGTTCTGGCCAGGGCTGACCTTTTGAAATTTCTCAAGAAGGAATGTGAAGAGCGAGGCGCTGCAATTGTCTATGCAACACATATATTTGATGGTCTCGAGGATTGGCCATCTCACATAGTTTATGTGGCTCGTGGGAAGTTGCAATTAGCAATGCCGATGGATAAAGTTAAGGAGATCAGCAATTTGTCATTAATGAGAACCGTAGAGAGTTGGCTGAGGAAAGAAAGAGATGAGGAGAGGAAACGAAGAAAAGAAAGGAAGGCTAAGGGTCTCCCGGAATTTGAGAAACAGGTCGACGGCACACGTGTGACTGGCGAACCGGTACGCGTTTTGAACAACGGCTGGGCTGCTGGGAGGCTCAATTCCACCGTTGCTGGTGAAGAGAATTTTGTTTTGAGTTCAAACAGAGTTGTTAGACAGTAG

Network for GWHGAAZE033922

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00005.28	ABC_tran	41	186	2.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12608	CAF16	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	60.389
	SRR3591706	second leaf	17.687
	SRR3591707	mature leaf	8.656
	SRR3591708	Shoot apex	19.550
	SRR3591709	Stem	27.115
	SRR3591710	White floral bud	30.946
	SRR3591711	White flower	40.549
	SRR3591712	Green floral bud	31.659
	SRR3591713	Yellow flower	28.828
SRP173429	SRR8316895	Juvenile bud stage	22.410
	SRR8316896	Juvenile bud stage	31.022
	SRR8316897	Juvenile bud stage	19.602
	SRR8316894	Third green stage	17.030
	SRR8316900	Third green stage	66.935
	SRR8316901	Third green stage	80.830
	SRR8316898	Complete white stage	42.751
	SRR8316899	Complete white stage	70.887
	SRR8316903	Complete white stage	52.062
	SRR8316902	Silver flowering stage	40.459
	SRR8316904	Silver flowering stage	51.465
	SRR8316905	Silver flowering stage	29.745
	SRR8316906	Gold flowering stage	53.095
	SRR8316907	Gold flowering stage	56.836
	SRR8316908	Gold flowering stage	55.705
SRP132670	SRR6706286	Control	60.098
	SRR6706287	Light intensity 50%	60.023
	SRR6706288	Light intensity 20%	56.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.427
	CNS0095593	Slightly white alabastrum(diploid) 2	39.259
	CNS0095594	Slightly white alabastrum(diploid) 3	29.802
	CNS0095595	Whole white alabastrum(diploid) 2	37.851
	CNS0095596	Whole white alabastrum(diploid) 3	37.065
	CNS0095597	Whole white alabastrum(diploid) 4	37.701
	CNS0095598	Silvery flower (diploied) 1	25.356
	CNS0095599	Silvery flower (diploied) 2	28.009
	CNS0095600	Silvery flower (diploied) 3	59.834
	CNS0095601	Golden flower (diploid) 1	24.041
	CNS0095602	Golden flower (diploid) 2	32.998
	CNS0095603	Golden flower (diploid) 3	29.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	44.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.858
	CNS0095606	Slightly white alabastrum(tetraploid) 3	51.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	37.071
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.224
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.700
	CNS0095610	Silvery flower (tetraploid) 1	94.990
	CNS0095611	Silvery flower (tetraploid) 2	56.565
	CNS0095612	Silvery flower (tetraploid) 3	26.238
	CNS0095613	Golden flower (tetraploid) 1	38.775
	CNS0095614	Golden flower (tetraploid) 2	51.625
	CNS0095615	Golden flower (tetraploid) 3	20.267
CRA001975	CRR073297	Stem 1	22.519
	CRR073298	Stem 2	20.504
	CRR073299	Stem 3	16.559
	CRR073300	Leaf 1	38.931
	CRR073301	Leaf 2	51.706
	CRR073302	Leaf 3	33.575
	CRR073303	Juvenile bud 1	46.541
	CRR073304	Juvenile bud 2	49.446
	CRR073305	Juvenile bud 3	39.021
	CRR073306	Third green 1	133.604
	CRR073307	Third green 2	93.880
	CRR073308	Third green 3	96.990
	CRR073309	Second white 1	65.309
	CRR073310	Second white 2	83.806
	CRR073311	Second white 3	57.733
	CRR073312	Silver flowering 1	39.096
	CRR073313	Silver flowering 2	40.960
	CRR073314	Silver flowering 3	32.611
	CRR073315	Gold flowering 1	21.164
	CRR073316	Gold flowering 2	19.742
	CRR073317	Gold flowering 3	10.171
	CRR073318	Tawny withering 1	16.760
	CRR073319	Tawny withering 2	23.157
	CRR073320	Tawny withering 3	16.466