Gene detail

Detail information of GWHGAAZE033923

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792096.1	0	PREDICTED: galactinol synthase 2 [Nicotiana sylvestris]
COG	YP_004116387.1	1E-27	glycosyl transferase family protein
Swissprot	tr\|C7G304\|GOLS2_SOLLC	0	Galactinol synthase 2
trEMBL	tr\|A0A068JCE2\|A0A068JCE2_TOBAC	0	Galactinol synthase 2 {ECO:0000313\|EMBL:AIE16185.1}
TAIR10	AT1G56600.1	2E-138	galactinol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1084379	1086186	-
GWHAAZE00000145	mRNA	1084379	1086186	-
GWHAAZE00000145	exon	1085854	1086186	-
GWHAAZE00000145	exon	1085352	1085672	-
GWHAAZE00000145	exon	1084379	1084805	-
GWHAAZE00000145	CDS	1085854	1086186	-
GWHAAZE00000145	CDS	1085352	1085672	-
GWHAAZE00000145	CDS	1084458	1084805	-
GWHAAZE00000145	three_prime_UTR	1084379	1084457	-

Transcript Sequence
>GWHTAAZE033963 ATGGCTCCTGATCTTGTTGTTGCTCCGGCTAACTCCGGCACCGGCCTCGTGAAGGCGGCTAGTCTGTCAAGCCGTGCTTATGTAACTTTCCTGGCTGGTACAGGAGACTACGTCAAAGGTGTGGTGGGTTTGGCTAAAGGGCTGAGAAGGGCCAAATCTGCGTACCCTCTTGTGGTGGCGGTTCTGCCCGATGTTCCTGTGGAGCACCGCCGCATACTGGTGGCTCAGGGATGTATAGTCCGGGAGATAGAGCCTGTGTACCCACCGGCAAATCAGACTGATTTCGCTATGGCCTATTATGTCATCAACTACTCCAAGCTCCGTATCTGGGAGTTTGTGGAGTATAGCAAAATGATATACTTGGATGGGGATATACAAGTGTTTGAAAATATAGACCACCTCTTTGACTTGCCAGGTGGCTACTTTTATGCTGTGAAGGATTGTTTCTGTGAGAAAACATGGAGTCACAGCCCACAGTACAAGATTGGGTACTGCCAGCAGTGCCCTAACAAGGTCCAGTGGGACCCAGAGTTGGGTCCAGAGCCACCTCTGTACTTCAATGCTGGCATGTTTTTGTATGAACCCAATCTCTCCACCTACCATGACCTCCTCACCACCCTCCAAGTCACCCCTCCCACCTCTTTTGCTGAGCAGGACTTTTTGAACATGTACTTTAGGGATATATACAAGCCAATCCCTTCATCATACAACTTGGTGTTGGCCATGCTGTGGCGCCACCCTGAGAACATTGACCTAAACAAAGTGAAAGTGGTCCATTACTGTGCTGCTGGCTCGAAGCCATGGAGGTACACCGGCGAAGAAGAGAACATGCAGAGAAAAGACATAAAGATGCTTGTTCAAAAATGGCGAGAAATATACGATGATGCATCATTGGATTACGATGGGCCAGTTGACAATGACAGTCTTCAAAAGCTTATGGCAGCGGCTATATCCAACGCCGCGAGAGGTGTTCCCCATGTCACCACCCCATCTGCTGCCTAGGCGGCCGCAGTTCTTTTGATTTATTGTTAATTCTCCCTTCCCCTCATTTTTTTGGAGGAGGGTACGGTATACTTTAATT

Network for GWHGAAZE033923

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	29	271	3.60E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18819	GOLS	Metabolic pathways	map01100
K18819	GOLS	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.635
	SRR3591706	second leaf	0.713
	SRR3591707	mature leaf	0.690
	SRR3591708	Shoot apex	2.772
	SRR3591709	Stem	8.774
	SRR3591710	White floral bud	3.677
	SRR3591711	White flower	0.932
	SRR3591712	Green floral bud	4.577
	SRR3591713	Yellow flower	1.073
SRP173429	SRR8316895	Juvenile bud stage	0.938
	SRR8316896	Juvenile bud stage	1.783
	SRR8316897	Juvenile bud stage	2.325
	SRR8316894	Third green stage	2.007
	SRR8316900	Third green stage	1.630
	SRR8316901	Third green stage	3.012
	SRR8316898	Complete white stage	0.033
	SRR8316899	Complete white stage	0.698
	SRR8316903	Complete white stage	0.319
	SRR8316902	Silver flowering stage	0.061
	SRR8316904	Silver flowering stage	0.226
	SRR8316905	Silver flowering stage	0.108
	SRR8316906	Gold flowering stage	0.057
	SRR8316907	Gold flowering stage	0.105
	SRR8316908	Gold flowering stage	0.332
SRP132670	SRR6706286	Control	1.144
	SRR6706287	Light intensity 50%	1.276
	SRR6706288	Light intensity 20%	1.170
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.011
	CNS0095593	Slightly white alabastrum(diploid) 2	5.417
	CNS0095594	Slightly white alabastrum(diploid) 3	3.689
	CNS0095595	Whole white alabastrum(diploid) 2	2.847
	CNS0095596	Whole white alabastrum(diploid) 3	1.534
	CNS0095597	Whole white alabastrum(diploid) 4	1.009
	CNS0095598	Silvery flower (diploied) 1	1.359
	CNS0095599	Silvery flower (diploied) 2	1.122
	CNS0095600	Silvery flower (diploied) 3	0.511
	CNS0095601	Golden flower (diploid) 1	0.923
	CNS0095602	Golden flower (diploid) 2	0.620
	CNS0095603	Golden flower (diploid) 3	0.689
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.407
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.849
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.127
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.867
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.734
	CNS0095610	Silvery flower (tetraploid) 1	0.137
	CNS0095611	Silvery flower (tetraploid) 2	0.359
	CNS0095612	Silvery flower (tetraploid) 3	0.919
	CNS0095613	Golden flower (tetraploid) 1	0.171
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.647
CRA001975	CRR073297	Stem 1	2.267
	CRR073298	Stem 2	4.306
	CRR073299	Stem 3	2.661
	CRR073300	Leaf 1	11.470
	CRR073301	Leaf 2	11.244
	CRR073302	Leaf 3	10.533
	CRR073303	Juvenile bud 1	4.139
	CRR073304	Juvenile bud 2	0.996
	CRR073305	Juvenile bud 3	2.968
	CRR073306	Third green 1	0.132
	CRR073307	Third green 2	0.111
	CRR073308	Third green 3	0.188
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.167
	CRR073311	Second white 3	0.068
	CRR073312	Silver flowering 1	1.004
	CRR073313	Silver flowering 2	1.097
	CRR073314	Silver flowering 3	1.064
	CRR073315	Gold flowering 1	0.720
	CRR073316	Gold flowering 2	2.262
	CRR073317	Gold flowering 3	0.969
	CRR073318	Tawny withering 1	12.323
	CRR073319	Tawny withering 2	6.840
	CRR073320	Tawny withering 3	9.250