Gene detail

Detail information of GWHGAAZE033927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008781178.1	2.8793E-174	PREDICTED: AP-3 complex subunit mu isoform X4 [Phoenix dactylifera]
Swissprot	tr\|F4I562\|AP3M_ARATH	3E-124	AP-3 complex subunit mu
trEMBL	tr\|M5VYD5\|M5VYD5_PRUPE	1E-131	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06462.1}
TAIR10	AT1G56590.1	7E-102	Clathrin adaptor complexes medium subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1135576	1145270	+
GWHAAZE00000145	mRNA	1135576	1145270	+
GWHAAZE00000145	exon	1135576	1135610	+
GWHAAZE00000145	exon	1135865	1135964	+
GWHAAZE00000145	exon	1136309	1136419	+
GWHAAZE00000145	exon	1137284	1137373	+
GWHAAZE00000145	exon	1137475	1137500	+
GWHAAZE00000145	exon	1139824	1140033	+
GWHAAZE00000145	exon	1144222	1144429	+
GWHAAZE00000145	exon	1145025	1145270	+
GWHAAZE00000145	CDS	1135576	1135610	+
GWHAAZE00000145	CDS	1135865	1135964	+
GWHAAZE00000145	CDS	1136309	1136419	+
GWHAAZE00000145	CDS	1137284	1137373	+
GWHAAZE00000145	CDS	1137475	1137500	+
GWHAAZE00000145	CDS	1139824	1140033	+
GWHAAZE00000145	CDS	1144222	1144429	+
GWHAAZE00000145	CDS	1145025	1145270	+

Transcript Sequence
>GWHTAAZE033967 ATGTTGCAGTGTATTTTTCTTCTGTCAGATTCTGGTGAGGTAATTCTGGAGAAACAGCTGTCGGGTCATTGGGTGGATCGGTCAATTTGTGATTGGTTTTGGGAACAATCAGTATCTCAAGGTGATTCCTTCAAGCTTTTGCCGGTAATCGCATCACCAACGCACTACCTTTTCCAAATTGTTCGCAAGGGGATCACATTCTTAGCCTGCACCCAAGTTGAAATGCCACCACTGATGGCAATTGAGTTCCTTTGCAGAGTAGCTGATGTTCTCTCAGATTATCTTGGAGTGTTAAATGAGGATATAATAAAGGATAACTTTGTTATCGTTTATGAGAAGAAAGACCATCCATCGTCTAGATTGGATGGGGTCCTGGTGAAATGTGAGATATATGGGGAGGTCCAATTGAATTCTCATCTCTCGGGGCTTCCTGATTTGACACTCACATTTGCAAACCCTTCCATTCTGAACGACGTGCAATTCCACCCTTGTGTTCGGTTTCGGCCATGGGAATCCCAACAAATCCTGTCCTTTGTGCCTCCTGATGGACACTTTAAGCTCATGAGTTACAGGGTTAAGAAATTGAAGAATACTCCAATATACGTAAAGCCACAGCTGACCTCAGAATCTGGGATGTGTCGTATTAATGTGTTGGTTGGAATGAGAAACGATCCAGGGAAGACAATTGATGCAATAACAGTTGAATTCCAACTGCCTCCTTGCATTTTATCAGCTGACGTTACTGCTAATCATGGAACTGTTACCATCCTCTCTAATAAGAGGTGCTGTTGGTCCATTGGACGAATCCCGAAAGACAAAGCCCCTTCAATATCGGGAACGATGGTGCTGGAGGCCGGCTTAGAGCGTCTCCACGTATCTCCAACTTTCGAAGTGGGTTTCAAGATCGCGGGCGTTGCTCTCTCTGGCCTCCGACTTGAGAAATTGGATTTAAAGAATGTACCTACGCGGCCATACAAAGGTTTTCGAGCTCAAACAGAAGCCGGGGAATATGAAGTAAGGTCCTAG

Network for GWHGAAZE033927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00928.22	Adap_comp_sub	108	340	2.00E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12398	AP3M	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0030131	cellular_component	clathrin adaptor complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.703
	SRR3591706	second leaf	7.447
	SRR3591707	mature leaf	6.212
	SRR3591708	Shoot apex	13.182
	SRR3591709	Stem	13.238
	SRR3591710	White floral bud	12.457
	SRR3591711	White flower	12.971
	SRR3591712	Green floral bud	14.684
	SRR3591713	Yellow flower	15.090
SRP173429	SRR8316895	Juvenile bud stage	9.880
	SRR8316896	Juvenile bud stage	15.175
	SRR8316897	Juvenile bud stage	6.581
	SRR8316894	Third green stage	6.801
	SRR8316900	Third green stage	20.103
	SRR8316901	Third green stage	19.044
	SRR8316898	Complete white stage	10.022
	SRR8316899	Complete white stage	21.715
	SRR8316903	Complete white stage	14.089
	SRR8316902	Silver flowering stage	10.369
	SRR8316904	Silver flowering stage	13.448
	SRR8316905	Silver flowering stage	5.194
	SRR8316906	Gold flowering stage	22.359
	SRR8316907	Gold flowering stage	18.043
	SRR8316908	Gold flowering stage	18.956
SRP132670	SRR6706286	Control	18.211
	SRR6706287	Light intensity 50%	16.829
	SRR6706288	Light intensity 20%	18.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.788
	CNS0095593	Slightly white alabastrum(diploid) 2	12.298
	CNS0095594	Slightly white alabastrum(diploid) 3	12.452
	CNS0095595	Whole white alabastrum(diploid) 2	16.157
	CNS0095596	Whole white alabastrum(diploid) 3	14.667
	CNS0095597	Whole white alabastrum(diploid) 4	14.207
	CNS0095598	Silvery flower (diploied) 1	13.095
	CNS0095599	Silvery flower (diploied) 2	12.505
	CNS0095600	Silvery flower (diploied) 3	25.088
	CNS0095601	Golden flower (diploid) 1	11.950
	CNS0095602	Golden flower (diploid) 2	21.024
	CNS0095603	Golden flower (diploid) 3	20.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.681
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.950
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.773
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.249
	CNS0095610	Silvery flower (tetraploid) 1	21.770
	CNS0095611	Silvery flower (tetraploid) 2	23.504
	CNS0095612	Silvery flower (tetraploid) 3	16.755
	CNS0095613	Golden flower (tetraploid) 1	15.813
	CNS0095614	Golden flower (tetraploid) 2	22.398
	CNS0095615	Golden flower (tetraploid) 3	20.370
CRA001975	CRR073297	Stem 1	14.400
	CRR073298	Stem 2	14.142
	CRR073299	Stem 3	14.373
	CRR073300	Leaf 1	18.569
	CRR073301	Leaf 2	17.659
	CRR073302	Leaf 3	18.438
	CRR073303	Juvenile bud 1	21.712
	CRR073304	Juvenile bud 2	17.253
	CRR073305	Juvenile bud 3	22.333
	CRR073306	Third green 1	9.641
	CRR073307	Third green 2	13.377
	CRR073308	Third green 3	9.574
	CRR073309	Second white 1	14.526
	CRR073310	Second white 2	13.394
	CRR073311	Second white 3	15.977
	CRR073312	Silver flowering 1	13.057
	CRR073313	Silver flowering 2	11.872
	CRR073314	Silver flowering 3	9.226
	CRR073315	Gold flowering 1	9.901
	CRR073316	Gold flowering 2	8.507
	CRR073317	Gold flowering 3	7.057
	CRR073318	Tawny withering 1	14.688
	CRR073319	Tawny withering 2	11.505
	CRR073320	Tawny withering 3	16.426