Gene detail information of Glyur000001s00000001.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G32540.1 | 9.00E-52 | lsd one like 1 |
| NR | AFK36740.1 | 6.33E-97 | unknown [Lotus japonicus] |
| Swissprot | tr|Q93ZB1|LOL1_ARATH | 3.00E-81 | Protein LOL1 |
| trEMBL | tr|I3S8Z8|I3S8Z8_LOTJA | 2.00E-97 | Uncharacterized protein {ECO:0000313|EMBL:AFK36740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00001 | 170 | 3803 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-LSD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000001s00000001.1 | PF06943.7 | zf-LSD1 | 28 | 52 | 8.10E-11 |
| Glyur000001s00000001.1 | PF06943.7 | zf-LSD1 | 67 | 91 | 1.50E-12 |
| Glyur000001s00000001.1 | PF06943.7 | zf-LSD1 | 105 | 129 | 5.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.441 |
| SRR1783600 | control | 0.476 |
| SRR1783602 | moderate drought stress | 1.530 |
| SRR1811619 | moderate drought stress | 1.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.465 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.188 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.382 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.256 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.148 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.978 |
| SRR2967015 | Control (Tissue:root) | 2.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.366 |
| SRR9715740 | Leave | 25.734 |
| SRR9715741 | Leave | 16.570 |
| SRR9715739 | Root | 0.236 |
| SRR9715742 | Root | 0.280 |
| SRR9715743 | Root | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.339 |
| SRR8749028 | MeJA induced 9h | 0.087 |
| SRR8749029 | MeJA induced 9h | 0.079 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.066 |
| SRR8749032 | Uninduced | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.189 |
| SRR8400027 | Control-Root | 1.688 |